50 recent changes in Main Web retrieved at 14:13 (Local)

WfccmMultidimensionalScaling
Multidimensional Scaling Design: Detailed Time Line and Tasks Specification Apr 18 May 27 6 weeks 1. Determine algorithm(s) to aquire 3D data. 1. Determ...
WfccmDownload
* Version 1.14 2004 07 13 Built to use a static library. * Version 1.13 2004 04 14 User interface changes by Joan Zhang. * Version 1.12 2004 03 12 Fi...
WfccmBallGraphSummary
BallGraphSummary Public Data Member * ArrayList lines the container for the lines * string title title of the graph * string testLabel1 label of t...
WfccmBallGraphPanel
ClassBallGraphPanel Public Data Members * int tickMax – Max value of tick of scale, default is 0 * int tickMin – minimum value of tick of scale, default is...
WfccmDataQualityControl
Data Quality Control Design Goals * Ability to generate ICC Kappa value, Agreement rate, and Correlation values based on a data set. * Ability to gener...
WillDoyle
* Name: Will Doyle * Email: w.doyle #64;vanderbilt.edu * Phone Number: 322 2904 * Comment: Personal Preferences (details in .TWikiVariables) * Horizo...
WfccmClassDescriptions
Interface descriptions * IDataSet Interface for datasets. Class descriptions * DataContainer Parent class for the data classes * InformationSet ...
WfccmNetworkListener
NetworkListener Public Methods * NetworkListener(int) The constructor. * Start() Starts listening for incoming connections. * Stop() Stops listeni...
WfccmNetwork
Network Public Methods * Network(IPAddress, int) Constructor for starting a connection. * Network(string, int) Constructor for starting a connection. ...
WfccmLimitedPublicVersion
Add Limitations to public versions * No Cross Validation * No Permutation P Value * No KS * No Hu Wright * No Sam * No Access to quality c...
WfccmObjectRocc
ROCC Object Design Data Members * sens, vector of sensitivity values. * spec, vector of specificity values. * markerlabel, name of the marker. * cas...
WfccmPlotChart
PlotChart Public Members * float VerticalOffset Offset as a percentage * ex: if you want the top 10% and bottom 10% of the panel to be blank, set thi...
WfccmDataToolsVisualization
Data Tool and Visualization Detailed Time Line and Tasks Specification Apr 18 Apr 22 1 week 1. Determine interface requriments. 1. Determine output requri...
WfccmQualitycontrol
QualityControl Private Methods * GenerateAgreement_NoGp (DoubleProgress, DataSet, string, string) * GenerateAgreement_InGp (DoubleProgress, DataSet, Data...
WfccmROCCurve
ROC Curve Analysis Design Goals * Implement the ROC functions and produce the plot of the results. * Calculate the area of curve. * Draw graphic object...
WfccmPanelRocc
Rocc Panel Design Controls * labelTitle, labelAUC Show the area under the curve. * plotChart, label1, label2 Create a general Quadrant I plot. * but...
WfccmLargeDataSetCapability
Large Data Set Capability Detailed Time Line and Tasks Large DataSet Implementaiton Apr18 May 06 3 weeks 1. Implement objects. 1. Build the interface. ...
WfccmPrePostHowto
WFCCM Pre Post Guide This is a guide for running pre post analysis in WFCCM. For a pre post analysis, there needs to be a pre treatment and post treatment sample ...
WfccmAddGroupingsCriteriaManagers
Add DataGroupings and CriteriaManagers DataGroupings Working on a large project and having to create the same 6 groupings several times (incuding creating column...
WfccmQcAgreement
Kappa Value and Agreement Rate algorithms * 1. For each gene/feature, convert their are values to binary * new value(proteinomic data) = 1 if old value i...
WfccmSpectraData
SpectraData Enum DisplayableTypes * Raw, Baseline, BaselineCorrected, Denoised, Centroids, Peaks Public Members * Name spectra name * Classification...
WfccmSpectraDisplay
SpectraDisplay Public Members * bool ShowRaw get/set to indicate whether raw data is displayed * bool ShowBaseline get/set to indicate whether baseline...
WfccmSpectraDataCollection
SpectraDataCollection Public Members * AllSpectra collection of SpectraData objects * DisplayedSpectra indices of those spectra that should be disp...
WfccmOptionData
OptionData Public Methods * OptionData() * OptionData(string) * Copy() * Load(string) * Save(string) Properties * AutoLoadLog * AutoLoa...
WfccmDataSet
DataSet Parent: DataContainer, Interface: IDataSet Public Methods * DataSet(DataSet) Copy Constructor overload that handles the name list. * SetDataPoi...
WfccmMemoryMapDataSet
MemoryMapDataSet Interface: IDataSet Public Methods * MemoryMapDataSet(string) Constructor that takes the path/file name. * MemoryMapDataSet(string, int)...
WfccmIDataSet
IDataSet Public Methods * GetDataPoint(int, int) * GetColumnName(int) * GetColIndexFromName(string) * GetRowId(int) * GetRowIndexFromId(int) * ...
WfccmLargeDataSetSubClassProsCons
Large DataSet SubClass Pros and Cons Description For large dataset capabilities, we might need to make the read only MemoryMapDataSet a subclass of DataSet. Pro...
WfccmCommandLineMethod
Console Wfccm Command line aspect of Wfccm. Limited capability extended. Todo * Add support for Shuo's preprocessed data log transformation not applicable ...
WfccmQualityControl
Quality Control TODO * ICC * Kappa * Agreement * Correlation Comparison Rationale (example of Agreement) * Input files: DataSet, InformationSet(o...
Wfccm2CommandLineDownload
Command Line Wfccm * Runs under Mono for Linux support * Incorporates basic Wfccm functionality
WfccmDataGrouping
DataGrouping Public Methods * DataGrouping(DataGrouping) Copy constructor. * Add(string, string) Adds a Column by name and sets group descriptor (def...
WfccmCriteriaManager
CriteriaManager Public Methods * CriteriaManager(CriteriaManager) The copy constructor. * Remove(string, string, double) Removes a score name, operat...
WfccmScoreTTest
ScoreTTest Parent: Score Public Methods * ScoreTTest() the default constructor. * ScoreTTest(ScoreTTest) copy constructor. * ScoreTTest(string) ...
WfccmScoreSam
ScoreSam Parent: Score Public Methods * ScoreSam() the default constructor. * ScoreSam(ScoreSam) copy constructor. * ScoreSam(string) Construct...
WfccmAlgorithmLikelihoodRatio
Likelihood Ratio Algorithm Suppose that we have data from stratum 0 and stratum 1. The test statistic is computed as : %$Z = 2Nlog(\frac{T}{N}) 2\sum N_jlog(\frac...
WfccmCriteriaManagerWarning
CriteriaManagerWarning Confirms changing the CriteriaManager type on the CriteriaManagerPanel because all criteria and the STD function are removed.
WfccmDataSetPanel
DataSetPanel Public Methods * LoadDataSetPanel(DataSetInfo) loads the DataSet contained within the DataSetInfo object. If an InformationSet has also been as...
WfccmDataStructureRefactor
This has been set aside for now, being replaced by memory mapped files. Temporary memory saving solution until C# 2.0 is officially released. Since an object tak...
WfccmScorePanel
ScorePanel Public Methods * LoadScore(Score, DataSet, string) * loads the given score, appending the actual row names from the given DataSet to the rowI...
WfccmRfunctions
Rfunctions Public Methods * Average(ArrayList) Returns the mean. * StDev(ArrayList, double) Returns the standard deviation. * Var(ArrayList) Retur...
WfccmClusterSummary
ClusterSummary NameRank Class * name * rank Public Methods * Load(string) Loads the given CDT file * string GetArryNameByRank(name, rank) give...
WfccmClusterNode
ClusterNode Enumeration NodeType * Node * Gene * Array Static (Class) Methods * ClusterNode Compare3(ClusterNode, ClusterNode, ClusterNode, bool) ...
WfccmCriteria
Criteria Public Members * Property Name * Property Operator * Property Value * Property IgnoreNumPass Protected * string name Name of the...
WfccmSummaryPercentages
SummaryPercentages Public Members * ArrayList Grp1 Grp2 Pcts Train Test Percentages * ArrayList Train Test Pcts Percentages for training or te...
WfccmDistanceReport
DistanceReport Static Methods * WriteMissedColumn(ArrayList, string, bool, double) Will first filter distanceResults for runs where overall percent correct...
WfccmThreadPool
ThreadPool Public Methods ThreadManager(int, WorkObject ) Remarks * Accepts a set of workobjects and does the work with the number of threads passed. Th...
WfccmWorkObject
WorkObject Public Members * int workObjNum workObject id number. Public Methods * DoWork() the function to run distance Remarks Generic work ...
WfccmWorkObject_Distance
WorkObject Public Members * CriterialManagemer cm * DataSet ds * DataGrouping dg * Score scr * DataSet tds * DataGrouping tdg Public Meth...
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Topic revision: r1 - 08 Sep 2009, ProjectContributor
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