Qi Liu, Ph.D. Associate Professor of Bioinformatics Technical Director of VANGARD
E-mail: qi.liu@vanderbilt.edu; qi.liu@vumc.org Phone: 615.322.6618 Fax: 615.936.2602 Office: Room 10114, 2525 West End Ave Nashville, TN, 37203	Vanderbilt University School of Medicine Department of Biostatistics 2525 West End, Ste. 11126 Nashville, TN 37203-2158

Research Interests

Dr. Liu's research focuses on integrating multi-omics data to address fundamental biological questions.

• Spatial omics data analysis
• Single-cell omics data analysis
• Single-cell Multiomics integration
• transcriptomics, genomics and epigenomics data
• Transcriptional and posttranscriptional regulation
• Enhancer-mediated regulation
• and More

Softwares and Databases

• Single cell and spatial transcriptomics data clustering based on adaptive k-nearest neighbor graph

aKNNO: https://github.com/liuqivandy/aKNNO

• Spatial pattern and co-localization

spaGene: https://github.com/liuqivandy/SpaGene

• Quantify cellular composition diversity across single cell transcriptomics data

scUniFrac: https://github.com/liuqivandy/scUnifrac

• Quality control of multiple single cell transcriptomics data

scRNABatchQC: https://github.com/liuqivandy/scRNABatchQC

• Multi-resolution cell type annotation for single cell transcriptomics data

scMRMA: https://github.com/JiaLiVUMC/scMRMA

• Predict TSS for human intergenic miRNA using GRO/PRO-seq data

mirSTP: http://bioinfo.vanderbilt.edu/mirSTP/

• Analyze Nascent transcriptomics profile from GRO/PRO-Seq data

NRSA: http://bioinfo.vanderbilt.edu/NRSA/

• Human active enhancers database to interpret regulatory variants

HACER: http://bioinfo.vanderbilt.edu/AE/HACER/

• Immunotherapy-related genomics portal in Melanoma

Immu-Mela: http://bioinfo.vanderbilt.edu/database/Immu-Mela/

• Immunotherapy-related genomics portal in Pan-cancer studies

Cancer-Immu: http://bioinfo.vanderbilt.edu/database/Cancer-Immu/

Publications

Google Scholar: https://scholar.google.com/citations?user=iDa_EYUAAAAJ&hl=en