Example Setup for Seminar Style Slides/Handouts
%Usage: pdflatex foo
% kprinter foo.pdf, print to pdf, 2-up for handouts
\documentclass[semhelv,semcolor,portrait,11pt]{seminar}
\usepackage{url,relsize} % relsize used for \smaller etc.
\centerslidesfalse
\slideframe{none}
\newcommand{\bs}[1]{\begin{slide*}\Ti{#1}}
\newcommand{\es}{\end{slide*}}
\newcommand{\Ti}[1]{\hfill {\textbf{\large \blue #1}\\}%
\vspace*{-1cm} \rule{\linewidth}{0.2mm}}
\newcommand{\mg}[1]{{\magenta #1}}
\newcommand{\rd}[1]{{\red #1}}
\newcommand{\bu}[1]{{\blue #1}}
\newcommand{\gr}[1]{{\green #1}}
\newcommand{\bi}{\begin{itemize}}
\newcommand{\ei}{\end{itemize}}
\newcommand{\be}{\begin{enumerate}}
\newcommand{\ee}{\end{enumerate}}
\newcommand{\ignore}[1]{}
\begin{document}
\vspace*{\stretch{1}}
\noindent\rule{\linewidth}{1mm}
\begin{flushright}
\huge Statistical Thinking in Biomedical Research \\[1ex]
\Large
Department of Biostatistics \\
School of Medicine \\
Vanderbilt University \\[1ex]
\normalsize{\url{biostat.mc.vanderbilt.edu/biostat/twiki/bin/view/Main/ClinStat}}
\end{flushright}
\rule{\linewidth}{1mm}
\vspace*{\stretch{2}}
\begin{center}
\textsc{\today}
\end{center}
\thispagestyle{empty}
%\newpagestyle{mine}{\hspace{\fill}\rightmark \hspace{\fill}\thepage}{}
%\pagestyle{mine}
%\markright{Introduction to Statistical Concepts}
\newcommand{\ra}{$\rightarrow$ }
\newcommand{\da}{$\downarrow$ }
\newcommand{\ua}{$\uparrow$ }
\newcommand{\sml}{\small}
\newcommand{\vsml}{\tiny}
\makeatletter
\def\@cite#1#2{~\ignorespaces\hspace{-.35em}$^{\scriptsize\scriptstyle#1\if@tempswa,#2\fi}$}
\makeatother
\bs{Section 1: Introduction to Statistical Concepts ---
Frank Harrell}
\bi
\item What does biostatistics have to offer to
biomedical research?
\item Statistical inference
\item Study design issues
\item Descriptive statistics
\item Measuring change
\item Biostatistical resources at VU
\ei
\es
\bs{What Does Biostatistics Offer?}
\bi
\item Help in developing concrete objectives and data acquisition
methods that meet the objectives, concrete descriptions
of primary and secondary endpoints
\item Appropriate experimental and study design
\bi
\item Sources of bias
\item Measurement issues
\item Efficiency/power
\item Maximizing use of a given number of animals
\item Interpretability of findings
\item Reproducibility of analyses
\ei
Choice of appropriate design depends crucially on the type of
experiment/disease and treatment being studied.
\item \ua likelihood that sample will yield estimates of adequate
precision to make experiments conclusive/affect medical practice
\item More efficient use of data
\item Formulate analysis plans without making inappropriate assumptions
\item {\scriptsize Estimate sample size (if fixed)}
\ei
\es
\bs{Example}
\bi
\item Objective: Does an intervention (could be a new drug,
patient education intervention, method of administration) improve
a response?
\item What is meant by ``response'' and how will it be
measured?
\item Is it based on symptoms, physiologic measurements, anatomical
measurements, or a combination?
\item Does the ``response'' variable truly
measure the effect of treatment?
\item When is the response measured --- 30 days after enrollment;
30 days after discharge from the hospital, anytime within a
5 year follow--up period, during the procedure, immediately
upon reperfusion after a coronary artery is unclamped,
after steady state, \ldots?\\
\newslide
\item If a ``time to'' endpoint, how much time is given to
enrolling patients and how much to follow--up?
\item Where will patients come from and which group do they represent?
\item How will the study results be used?
\ei
\es
\bs{Education Opportunities at VU}
\bi
\item MSCI program
\item MPH program
\item GCRC workshops
\item Short courses (\emph{Statistical Thinking} will be offered at
least twice/year)
\item Biostatistics seminars and workshops (see
\url{biostat.mc.vanderbilt.edu})
\ei
\es
\sml
\nocite{lan97how,bai95med}
\bibliographystyle{abbrv}
\bibliography{/home/harrelfe/bib/feh}
\end{document}
Example Usage of Report Style for Handouts
The output is optimized for handouts and for readability by instructor during presentation.
% Usage: pdflatex foo
% kprinter foo - print to pdf, 2-up for handouts
\usepackage{url,graphicx,relsize}
\topmargin -.2in % was -.75 then -.25in
\textheight 9in % was 9.5
\oddsidemargin -.25in
\evensidemargin -.25in
\textwidth 7in
\parskip 14pt
\parindent 0ex
\renewcommand\sfdefault{phv}% use helvetica for sans serif
\renewcommand\familydefault{\sfdefault}% use sans serif by default
\renewcommand{\co}[1]{\texttt{\smaller #1}} % for software commands
\newcommand{\sml}{\normalsize}
\newcommand{\nml}{\Large}
%Optimize for note-taking
\newenvironment{itmz}{
\renewcommand{\labelitemi}{\Huge$\cdot$}
\begin{itemize} \setlength{\itemsep}{3ex}}
{\end{itemize}}
\newcommand{\btable}[2]{
\need 2in
\begin{center}#2
\begin{tabular}{#1}
}
\newcommand{\etable}{
\end{tabular}
\end{center}
}
\newcommand{\mc}[2]{\multicolumn{#1}{c}{#2}}
\setkeys{Gin}{width=\textwidth}
\newcommand{\fig}[3]{\begin{figure}[!htbp]
\leavevmode
\centerline{\scalebox{#3}{\includegraphics{#1.pdf}}}
\caption{\large#2}
\label{#1}
\end{figure}}
\renewcommand{\thefootnote}{\alph{footnote}}
\newcommand{\sfbox}[1]{%
\setlength{\fboxrule}{0.05pt}\setlength{\fboxsep}{1pt}%
\fbox{\scriptsize #1}%
\setlength{\fboxrule}{0.4pt}\setlength{\fboxsep}{3pt}}
\setlength{\marginparsep}{-1ex}
\newcommand{\be}{\begin{enumerate}}
\newcommand{\ee}{\end{enumerate}}
\newcommand{\bi}{\begin{itmz}}
\newcommand{\ei}{\end{itmz}}
\newcommand{\ra}{$\rightarrow \ $}
\newcommand{\etal}{{\em et al.}}
\begin{document}
\author{ }
\vspace*{\stretch{1}}
\noindent\rule{\linewidth}{1mm}
\begin{flushright}
\Huge
\textsc{S for Statistical Data Analysis and Graphics} \\
\huge Frank E Harrell Jr \\
\Large
Department of Biostatistics \\
Vanderbilt University School of Medicine \\
{\tt f.harrell@vanderbilt.edu} \\
\url{http://biostat.mc.vanderbilt.edu/StatCompCourse} \\
{\small \today}
\end{flushright}
\rule{\linewidth}{1mm}
\vspace*{\stretch{2}}
\begin{center}
\vspace{.5in}
{\Large Workshop} \\ January 23 and 30, 2004 \\
\vspace{.5in}
\small
Copyright 2000-2004 FE Harrell ~~~ All Rights Reserved
\end{center}
\thispagestyle{empty}
\pagenumbering{roman}
%\setcounter{tocdepth}{2}
\tableofcontents
\pagenumbering{arabic}
\pagestyle{headings}
\setcounter{page}{1}
\nml
\chapter{Overview of Computer Languages and User Interfaces}
\section{Types of Products}
\bi
\item Operating systems: Windows, Unix, Linux, MacOS
\item Applications: Word, Excel
\item Commercial systems (Microsoft Windows and Office, \splus, SAS,
SPSS, Mac)
\bi
\item Code, bug list secret
\item Expensive unless your institution has a site license
\item Upgrades increase cost even though don't always add useful
features
\ei
\item Free open-source systems (Linux, \LaTeX, OpenOffice, R)
\bi
\item Revolution in software availability and function from the open
source movement
\item Acceptance of free open-source \texttt{APACHE Web Server} by
the commercial world and maturity of Linux has spearheaded this
movement\footnote{\texttt{APACHE} is the number one Web server in
the world in terms of popularity, soon outdistancing Microsoft
servers by a 2:1 margin. \texttt{APACHE} is used by major
corporations for critical Web applications.
See \emph{Rebel Code} by Glyn Moody;
Cambridge MS: Perseus Publishing, 2001.}
\item Can see all code, change it, learn from it
\item Quality generally quite good
\item More rapid updates
\item No one obligated to assist users but most products have an
active and helpful user news group
\item Lacks some bells and whistles such as extensive GUI
\ei
\ei
\section{User Interfaces}
\bi
\item Graphical (GUI, mouse, menus)
\bi
\item Easier to learn
. . .
\sml
\bibliographystyle{abbrv}
\bibliography{/home/harrelfe/bib/feh}
\end{document}