WfccmPresentation2005 < Main < Vanderbilt Biostatistics Wiki

Topics to be covered

Sections

Introduction
1. Three Steps
  1. 1 Select Features
    1. Gene or Mass Charge
    2. Statistical Methods
  2. 2 Test Features
    1. Wfccm
    2. Cross Validation
  3. 3 Apply to Testing Data
    1. Permutation P Value
2. Select Features
  1. Top N Selection
  2. Cutoff Selection
  3. Statistical Methods
3. Feature Testing
  1. Wfccm
  2. Distance
  3. Cross Validation
4. Apply to Testing Data
  1. Apply Features From Training
  2. Permutation P Value
Run Setup demo
1. Loading data
  1. Adding a DataSet
    1. Choose log or not
    2. Generate logged 2 or 10 if needed
  2. Adding an InformationSet
  3. Adding a logged DataSet
  4. Loading a saved state
2. Generating data
  1. Creating a DataGrouping
    1. Generating Scores
      1. Select statistical tests
      2. Select cross-validation
    2. Adding Scores
  2. Creating a CriteriaManager
    1. Cutoff
      1. Adding criteria
    2. TopN
      1. Notice the ASC and DESC
  3. Distance
    1. Selecting a testing DataSet
      1. Selecting test grouping(s)
    2. Selecting training grouping(s)
    3. Selecting CriteriaManager(s)
3. Saving state
Output overview
1. Summary Chart
  1. How to read: Explanation of axes, legend and title
  2. Selecting a model, how to read resultant output
  3. Changing the labels
2. Missed Column Chart
  1. How to read: Explanation of axes, legend and title
  2. Additional information on patient
3. Eisens
  1. Basic Generation

This topic: Main > Projects > MicroArrayMassSpec > GeneralWfccmDesign > WfccmPresentation2005
Topic revision: 31 Jan 2005, JeremyRoberts

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