Possible Options in Wfccm2

• General
  • Data
    • type - MicroArray or MassSpec
    • normalized - DataExplorer or WaveletPreprocessing
  • Methods - default statistical methods to run
  • Autoload
    • info set - if selected, auto load *_info.txt from the current directory.
    • logged data - if selected, auto load *_log10.txt or *_log2.txt from the current directory.
    • grouping specification - *_groups.txt
    • topN and cutoff - *_models.txt
  • Cross-Validation
    • enabled
    • k - set the K-fold.
  • Outfile
    • autosave scores - if selected, auto save scores as *_scores.txt at the current directory.
    • Individual Training output - if selected, produce a individual folder of training output.
    • Individual Testing output - if selected, produce a individual folder of testing output.
    • filtered training data - if selected, produce a individual folder of filtered training data.
    • filtered testing data - if selected, produce a individual folder of filtered testing data.

• Visualization
  • summary charts
    • location - chose "in the distance output folder" or "in a universal images folder".
    • resolution - set output size.
  • Cluster
    • resolution - set output size or point pixel size.

• Future
  • ROC curve output
  • quality control