Instead of forcing the load and save dialogs, we could have import/export options with buttons or a menu. Are we going to only use the flat file storage or are there any plans for using the Windows Regisitry?
General
Data
type - MicroArray or MassSpec
normalized - DataExplorer or WaveletPreprocessing
Methods - default statistical methods to run
Autoload
info set - if selected, auto load *_info.txt from the current directory.
logged data - if selected, auto load *_log10.txt or *_log2.txt from the current directory.
grouping specification - *_groups.txt
topN and cutoff - *_models.txt
Cross-Validation
enabled
k - set the K-fold.
Outfile
autosave scores - if selected, auto save scores as *_scores.txt at the current directory.
Individual Training output - if selected, produce a individual folder of training output.
Individual Testing output - if selected, produce a individual folder of testing output.
filtered training data - if selected, produce a individual folder of filtered training data.
filtered testing data - if selected, produce a individual folder of filtered testing data.
Visualization
summary charts
location - chose "in the distance output folder" or "in a universal images folder".