Command line aspect of Wfccm. Limited capability extended.

  • wfccm2 -train <-generate> -d dataSet <-l logdataset> -g groupingfile -f filterfile <-r runname>
    • <scores.txt>, means.txt, train_output.txt
  • wfccm2 -test -d dataSet -f filterfile -s scorefile -m meansfile <-g grouping> <-r runname> *test_output.txt

Command Line options

  • -train : Indicates that a training type analysis in going to be done
  • -test : Indicates that a testing type analysis in going to be done
  • <-generate> : Indicates that the program needs to generate scores
  • -d dataSet : path to the data set
  • <-l logdataset> : Path to the log dataset
  • -g groupingfile : path to the grouping file
  • -f filterfile : path to the filter criteria file
  • -s scorefile : path to the score file
  • -m meansfile : path to the distance output means.
  • <-r runname> : optional run name that will be added to the output names.
  • scores.txt : score output file.
  • means.txt : Means output file.
  • train_output.txt : Training output
  • test_output.txt : Testing output

Extended Functionality needed

  1. DataGrouping.Write
  2. DataGrouping.Read
  3. CriteriaSet.Write
  4. CriteriaSet.Read

Defaults

  • Scores to be generated:
    • Sam
    • Wga
    • Info
    • TTest
    • Fisher
    • Wilcox
  • Function: (1-info) * ( asam_std + tvalue_std + fvalue_std + wvalue_std )
  • Sign: tvalue will set fvalue, wvalue and asam

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Topic revision: r1 - 08 Nov 2004, JeremyRoberts
 

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