Command line aspect of Wfccm. Limited capability extended.
wfccm2 -train <-generate> -d dataSet <-l logdataset> -g groupingfile -f filterfile <-r runname>
<
scores.txt>,
means.txt,
train_output.txt
wfccm2 -test -d dataSet -f filterfile -s scorefile -m meansfile <-g grouping> <-r runname> *
test_output.txt
Command Line options
-train : Indicates that a training type analysis in going to be done
-test : Indicates that a testing type analysis in going to be done
<-generate> : Indicates that the program needs to generate scores
-d dataSet : path to the data set
<-l logdataset> : Path to the log dataset
-g groupingfile : path to the grouping file
-f filterfile : path to the filter criteria file
-s scorefile : path to the score file
-m meansfile : path to the distance output means.
<-r runname> : optional run name that will be added to the output names.
scores.txt : score output file.
means.txt : Means output file.
train_output.txt : Training output
test_output.txt : Testing output
Extended Functionality needed
DataGrouping.Write
DataGrouping.Read
CriteriaSet.Write
CriteriaSet.Read
Defaults
Scores to be generated:
Sam (sam, asam)
Wga (wga)
Info (info)
TTest (tvalue, prob_t)
Fisher (fvalue, prob_f)
Wilcox (cvalue, prob_c)
Function:
(1 - info)*(numPass / 6)*(asam_std + tvalue_std + fvalue_std + cvalue_std)
Sign: tvalue will set fvalue, cvalue and asam
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WfccmCommandLineMethod
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