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WfccmClassDescriptions
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Interface descriptions
IDataSet
- Interface for datasets.
Class descriptions
DataContainer
- Parent class for the data classes
InformationSet
- Container for additional information (string)
DataSet
- Container for data
Cluster
- Container for clustered data
Score
- Container for scores
FilteredScore
- Container for filtered subsets of scores
ScoreExpression
- Generates expression (over or under) for data
ScoreFDR
-
False Discovery Rate Algorithm
ScoreFisher -
Fisher Algorithm
ScoreHu
-
Hu-Wright Algorithm
ScoreInfo -
InfoScore Algorithm
ScoreKS -
Kolmogorov-Smirnov Algorithm
ScoreLikelihoodRatio -
Likelihood-Ratio Algorithm
ScoreLogRankWilcoxon -
Log-Rank Wilcoxon Algorithm
ScorePhreg
-
CoxPH Algorithm
ScoreSam
-
SAM Algorithm
ScoreTTest
-
TTest Algorithm
ScoreWga -
WGA Algorithm
ScoreWilcoxon -
Wilcoxon Algorithm
MemoryMapDataSet
- Container for data, using a memory map
DataGrouping
- Container for grouping information
CriteriaManager
- Manages criteria sets
CutoffManager
- Manages Cutoff criteria sets
TopNManager
- Manages Top N criteria sets
CriteriaSet
- Container for multiple criteria
Criteria
- Score criteria
CombinationManager
- Manages combinations
Expression
- Flexible string function evaluator
Distance
- Object to calculate the distance
DistanceOutput
- Container for the distance output data
DistanceResult
- Object for containing overall distance results
DistanceReport
- Writes various distance reports
Summary
- Generates various summaries
SummaryPercentages
MissedValues
- Data representation of columns missed during a distance run
PartitionedDataSet
- Helps divide large DataSets into smaller ones
ProjectData
- Data structure that represents a single project including data, groupings, information, scores, criteria, etc.
OptionData
- Analysis, output, and GUI options.
ClusterSummary
ClusterNode
- Node representation of a .gtr or .atr file generated by clusters
Rfunctions
- Miscellaneous functions ported from R
UncminMethods
– Interface of Uncmin class
Uncmin
– Non-Linear Minimization using Newton-type algorithm
WorkObject
- Generic work object. Has the basic functions that the threadpool will use.
WorkObject_Distance
-
the class used for testing purpose, the logic will remain in Wfccm2 but the actually codes will not.
ThreadPool
-
the class used for testing purpose, the logic will remain in Wfccm2 but the actually codes will not.
Network
- Used for network communication basics.
Quality Control
-
QcAgreement
QcCorrelation
GUI Class descriptions
FormWfccm
Panels
DataSetPanel
- Shows data column headers and clinical information, if available
DataGroupingPanel
- Allows setting up a DataGrouping
ScorePanel
CriteriaManagerPanel
- Allows setting up a TopN or Cutoff CriteriaManager
DistancePanel
- Allows setting up Distance run(s)
ChartPanel
- (Mostly) Abstract class for making charts and bar graphs
SummaryPanel
- Displays the summary chart for a distance result
MissedChart
- Displays the missed columns in bar graph form for a distance result
ClusterPanel
Dialogs
ScoreGenerationDialog
SummaryLabelEditor
InformationPane
- Panel that displays information for a given column in an information set
GenerateClusterDialog
ClusterViewForm
SaveClusterDialog
DoubleProgress
OptionDialog
QcDialog
- performs Quality Control
Controls
DataSetView
ScoreView
DragableList
ClusterImage
ClusterView
Create New Class Topic
New class name:
New algorithm name:
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Topic revision: r46 - 07 Jul 2005,
JeremyRoberts
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