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WfccmClassDescriptions
(12 Jul 2005,
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<noautolink> ---+++ Interface descriptions * [[WfccmIDataSet][IDataSet]] - Interface for datasets. ---+++ Class descriptions * [[WfccmDataContainer][DataContainer]] - Parent class for the data classes * [[WfccmInformationSet][InformationSet]] - Container for additional information (string) * [[WfccmDataSet][DataSet]] - Container for data * [[WfccmCluster][Cluster]] - Container for clustered data * [[WfccmScore][Score]] - Container for scores * [[WfccmFilteredScore][FilteredScore]] - Container for filtered subsets of scores * [[WfccmScoreExpression][ScoreExpression]] - Generates expression (over or under) for data * <strike>ScoreFDR</strike> - [[WfccmAlgorithmFDR][False Discovery Rate Algorithm]] * ScoreFisher - [[WfccmAlgorithmFisher][Fisher Algorithm]] * [[WfccmScoreHu][ScoreHu]] - [[WfccmAlgorithmHu][Hu-Wright Algorithm]] * ScoreInfo - [[WfccmAlgorithmInfo][InfoScore Algorithm]] * ScoreKS - [[WfccmAlgorithmKS][Kolmogorov-Smirnov Algorithm]] * ScoreLikelihoodRatio - [[WfccmAlgorithmLikelihoodRatio][Likelihood-Ratio Algorithm]] * ScoreLogRankWilcoxon - [[WfccmAlgorithmLogRankWilcoxon][Log-Rank Wilcoxon Algorithm]] * [[WfccmScorePhreg][ScorePhreg]] - [[WfccmAlgorithmCoxPH][CoxPH Algorithm]] * [[WfccmScoreSam][ScoreSam]] - [[WfccmAlgorithmSAM][SAM Algorithm]] * [[WfccmScoreTTest][ScoreTTest]] - [[WfccmAlgorithmTTest][TTest Algorithm]] * ScoreWga - [[WfccmAlgorithmWGA][WGA Algorithm]] * ScoreWilcoxon - [[WfccmAlgorithmWilcoxon][Wilcoxon Algorithm]] * [[WfccmMemoryMapDataSet][MemoryMapDataSet]] - Container for data, using a memory map * [[WfccmDataGrouping][DataGrouping]] - Container for grouping information * [[WfccmCriteriaManager][CriteriaManager]] - Manages criteria sets * [[WfccmCutoffManager][CutoffManager]] - Manages Cutoff criteria sets * [[WfccmTopnManager][TopNManager]] - Manages Top N criteria sets * [[WfccmCriteriaSet][CriteriaSet]] - Container for multiple criteria * [[WfccmCriteria][Criteria]] - Score criteria * [[WfccmCombinationManager][CombinationManager]] - Manages combinations * [[WfccmExpression][Expression]] - Flexible string function evaluator * [[WfccmDistance][Distance]] - Object to calculate the distance * [[WfccmDistanceOutput][DistanceOutput]] - Container for the distance output data * [[WfccmDistanceResult][DistanceResult]] - Object for containing overall distance results * [[WfccmDistanceReport][DistanceReport]] - Writes various distance reports * [[WfccmSummaryModule][Summary]] - Generates various summaries * [[WfccmSummaryPercentages][SummaryPercentages]] * [[WfccmMissedValues][MissedValues]] - Data representation of columns missed during a distance run * [[WfccmPartitionedDataSet][PartitionedDataSet]] - Helps divide large DataSets into smaller ones * [[WfccmProjectData][ProjectData]] - Data structure that represents a single project including data, groupings, information, scores, criteria, etc. * [[WfccmOptionData][OptionData]] - Analysis, output, and GUI options. * [[WfccmClusterSummary][ClusterSummary]] * [[WfccmClusterNode][ClusterNode]] - Node representation of a .gtr or .atr file generated by clusters * [[WfccmRfunctions][Rfunctions]] - Miscellaneous functions ported from R * [[WfccmUncminMethods][UncminMethods]] – Interface of Uncmin class * [[WfccmUncmin][Uncmin]] – Non-Linear Minimization using Newton-type algorithm * [[WfccmWorkObject][WorkObject]] - Generic work object. Has the basic functions that the threadpool will use. * [[WfccmWorkObject_Distance][WorkObject_Distance]] - %GRAY% the class used for testing purpose, the logic will remain in Wfccm2 but the actually codes will not.%ENDCOLOR% * [[WfccmThreadPool][ThreadPool]] - %GRAY% the class used for testing purpose, the logic will remain in Wfccm2 but the actually codes will not.%ENDCOLOR% * [[WfccmNetwork][Network]] - Network communication basics. * [[WfccmNetworkListener][NetworkListener]] - Listens for network communication requests. * [[WfccmQualitycontrol][Quality Control]]- [[WfccmQcAgreement][QcAgreement]] [[WfccmQcCorrelation][QcCorrelation]] * [[WfccmBallGraphSummary][BallGraphSummary]] - contains summary information for the ballgraph class for the interface to use ---+++ GUI Class descriptions * [[WfccmFormWfccm][FormWfccm]] ---++++ Panels * [[WfccmDataSetPanel][DataSetPanel]] - Shows data column headers and clinical information, if available * [[WfccmDataGroupingPanel][DataGroupingPanel]] - Allows setting up a DataGrouping * [[WfccmScorePanel][ScorePanel]] * [[WfccmCriteriaManagerPanel][CriteriaManagerPanel]] - Allows setting up a TopN or Cutoff CriteriaManager * [[WfccmDistancePanel][DistancePanel]] - Allows setting up Distance run(s) * [[WfccmChartPanel][ChartPanel]] - (Mostly) Abstract class for making charts and bar graphs * [[WfccmSummaryPanel][SummaryPanel]] - Displays the summary chart for a distance result * [[WfccmMissedChart][MissedChart]] - Displays the missed columns in bar graph form for a distance result * [[WfccmClusterPanel][ClusterPanel]] * [[WfccmBallGraphPanel][BallGraphPanel]] - Displays the Means and StdDevs of group 1 and group 2 in Ball graph form for a distance result ---++++ Dialogs * [[WfccmScoreGenerationDialog][ScoreGenerationDialog]] * [[WfccmSummaryLabelEditor][SummaryLabelEditor]] * [[WfccmInformationPane][InformationPane]] - Panel that displays information for a given column in an information set * [[WfccmGenerateClusterDialog][GenerateClusterDialog]] * [[WfccmClusterViewForm][ClusterViewForm]] * [[WfccmSaveClusterDialog][SaveClusterDialog]] * [[WfccmDoubleProgress][DoubleProgress]] * [[WfccmOptionDialog][OptionDialog]] * [[WfccmQcDialog][QcDialog]]- performs Quality Control ---++++ Controls * [[WfccmDataSetView][DataSetView]] * [[WfccmScoreView][ScoreView]] * [[WfccmDragableList][DragableList]] * [[WfccmClusterImage][ClusterImage]] * [[WfccmClusterView][ClusterView]] ---+++ Create New Class Topic <form name="newclass" action="%SCRIPTURLPATH%/edit%SCRIPTSUFFIX%/%INTURLENCODE{"%WEB%"}%/"> %BR%New class name: <input type="text" name="topic" value="WfccmClass" /> <input type="hidden" name="templatetopic" value="WfccmClassTemplate" /><input type="hidden" name="topicparent" value="Main.WfccmClassDescriptions" /><input type="hidden" name="onlywikiname" value="on" /><input type="submit" value="Create" /> </form> <form name="newmethod" action="%SCRIPTURLPATH%/edit%SCRIPTSUFFIX%/%INTURLENCODE{"%WEB%"}%/"> %BR%New algorithm name: <input type="text" name="topic" value="WfccmAlgorithmTest" /><input type="hidden" name="topicparent" value="Main.WfccmClassDescriptions" /><input type="hidden" name="onlywikiname" value="on" /><input type="submit" value="Create" /> </form> </noautolink>
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Topic revision: r48 - 12 Jul 2005,
WillGray
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