Interface descriptions

• IDataSet - Interface for datasets.

Class descriptions

• DataContainer - Parent class for the data classes
  • InformationSet - Container for additional information (string)
  • DataSet - Container for data
    • Cluster - Container for clustered data
  • Score - Container for scores
    • FilteredScore - Container for filtered subsets of scores
    • ScoreExpression - Generates expression (over or under) for data
    • ScoreFDR - False Discovery Rate Algorithm
    • ScoreFisher - Fisher Algorithm
    • ScoreHu - Hu-Wright Algorithm
    • ScoreInfo - InfoScore Algorithm
    • ScoreKS - Kolmogorov-Smirnov Algorithm
    • ScoreLikelihoodRatio - Likelihood-Ratio Algorithm
    • ScoreLogRankWilcoxon - Log-Rank Wilcoxon Algorithm
    • ScorePhreg - CoxPH Algorithm
    • ScoreSam - SAM Algorithm
    • ScoreTTest - TTest Algorithm
    • ScoreWga - WGA Algorithm
    • ScoreWilcoxon - Wilcoxon Algorithm

• MemoryMapDataSet - Container for data, using a memory map

• DataGrouping - Container for grouping information

• CriteriaManager - Manages criteria sets
  • CutoffManager - Manages Cutoff criteria sets
  • TopNManager - Manages Top N criteria sets
• CriteriaSet - Container for multiple criteria
• Criteria - Score criteria
• CombinationManager - Manages combinations
• Expression - Flexible string function evaluator

• Distance - Object to calculate the distance
• DistanceOutput - Container for the distance output data
• DistanceResult - Object for containing overall distance results

• DistanceReport - Writes various distance reports
• Summary - Generates various summaries

• SummaryPercentages
• MissedValues - Data representation of columns missed during a distance run

• PartitionedDataSet - Helps divide large DataSets into smaller ones

• ProjectData - Data structure that represents a single project including data, groupings, information, scores, criteria, etc.
• OptionData - Analysis, output, and GUI options.

• ClusterSummary
• ClusterNode - Node representation of a .gtr or .atr file generated by clusters

• Rfunctions - Miscellaneous functions ported from R
• UncminMethods – Interface of Uncmin class
• Uncmin – Non-Linear Minimization using Newton-type algorithm

• WorkObject - Generic work object. Has the basic functions that the threadpool will use.
  • WorkObject_Distance - the class used for testing purpose, the logic will remain in Wfccm2 but the actually codes will not.

• ThreadPool - the class used for testing purpose, the logic will remain in Wfccm2 but the actually codes will not.

• Network - Network communication basics.
• NetworkListener - Listens for network communication requests.

• Quality Control- QcAgreement QcCorrelation

• BallGraphSummary - contains summary information for the ballgraph class for the interface to use

GUI Class descriptions

• FormWfccm

Panels

• DataSetPanel - Shows data column headers and clinical information, if available
• DataGroupingPanel - Allows setting up a DataGrouping
• ScorePanel
• CriteriaManagerPanel - Allows setting up a TopN or Cutoff CriteriaManager
• DistancePanel - Allows setting up Distance run(s)
• ChartPanel - (Mostly) Abstract class for making charts and bar graphs
  • SummaryPanel - Displays the summary chart for a distance result
  • MissedChart - Displays the missed columns in bar graph form for a distance result
• ClusterPanel
• BallGraphPanel - Displays the Means and StdDevs of group 1 and group 2 in Ball graph form for a distance result

Dialogs

• ScoreGenerationDialog
• SummaryLabelEditor
• InformationPane - Panel that displays information for a given column in an information set
• GenerateClusterDialog
• ClusterViewForm
• SaveClusterDialog
• DoubleProgress
• OptionDialog
• QcDialog- performs Quality Control

Controls

• DataSetView
• ScoreView
• DragableList
• ClusterImage
• ClusterView

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