2004 Biostatistics Seminar/Workshop Series December * Mass Spectrometry Data Processing Using Mathematical Tools and Statistical Techniques, by Don Hong, Visiting ...
2006 Biostatistics Seminar/Workshop Series December * Statistical Consultations Across Client Domains, by Ken Wright, Graduate Student and Roger Hall, PhD, Department ...
2007 Biostatistics Seminar/Workshop Series December * Winter Holidays No Workshop on December 26 * Special Thursday Seminar On the Voronoi Estimator for ...
2009 Biostatistics Seminar/Workshop Series December * December 30 No Seminar * December 23 No Seminar * December 16 A multivariate methodology for analyzing ...
2011 Biostatistics Seminar/Workshop Series December * December 28 NO SEMINAR * December 21 NO SEMINAR * December 14 Health Care Reform and the Dynamics of ...
Some modest suggestions to make Linux desktop computing easier and safer Linux Workshop presentation for Wednesday 31 March 2010 xrandr output LVDS1 mode 1280x800 ...
ASAP: An open source framework for building and executing a pipeline to preprocess next generation sequence data and variant calls. Advanced Sequence Automated Pipeline ...
ASAP Changelist V1.1.7 The following items have been changed/corrected or added in version 1.17 of ASAP. Item Notes Date Completed Added ability to run ...
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Alfresco User Notes Link for our Alfresco server: * http://alfrescologin.com/ * http://vbiostat.alfrescologin.com/ * https://biostats.app.vumc.org Do not ...
What is Alfresco? Alfresco Community Edition is an open source software platform for Enterprise Content Management. Enterprise content management is a "means of organizing ...
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Changes to document since 1 August 1997 1997 Added section 3.1.1 Adjustments to Variables after Input 15 Aug 97: Added section 4.1.7 Accessing Data Frames in ...
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Amy J. Graves Biostatistician II E mail: amy.j.graves@Vanderbilt.edu Phone: 615.343.4023 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
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My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
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Main.KathrynStoltzfus 05 Feb 2018 In development and adulthood, cognitive symptoms of disorders and disease are preceded by neuroanatomical abnormalities that are ...
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Audrey Carvajal Manager Administrative Email: audrey.carvajal@vumc.orgPhone: 615.343.7376Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
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Biostatistics Collaboration Center Overview Department of Biostatistics staff and faculty project effort is billed directly to each project as a percentage of salary ...
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Recommendations, Analyses, and Data for Biostatistics Basic and Animal Research Clinic Click here for older notes Biostatistics vs. Lab Research (aka I Need 3 Patients ...
Recommendations, Analyses, and Data for Biostatistics Basic and Animal Research Clinic Archive Current Notes 22 Nov 2013 Alexia Melo, Eischen Laboratory * My ...
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Department of Biostatistics Seminar/Workshop Series Selection of Optimal Cut Points to Dichotomize Continuous Predictors to Discriminate Disease Status Bethany J ...
BIOS 330 Assignment Zero Your assignment is to install and configure R and RStudio to produce an html file from the reproducible knitr document below. 1 Install ...
Biosketches Notes How to map (mount) the network share Please contact or direct requests for Biosketch and Other Support to our editorial assistant, Michael Wade ...
Biostatistics CVS Server We are offering both anonymous and commit access, and we will be glad to help facilitate any special needs you may have for this service. ...
Biostatistics Research This page contains some information for investigators who are planning to submit a grant proposal to the NIH. See also https://www.vumc.org ...
Checklist for Biostatistical Review of Research Protocols Hypotheses/Objectives * Clearly articulated and consistent with aims, both the null and alternative ...
Biostatistics Library Books available to personnel within the department Please record your name next to the book you borrowed. When you have returned it, remove your ...
On September 22, we will have a class discussing data visualization in biomedical research with guest lecturer, Meridith Blevins. We will review a basic recipe for ...
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Notes for box.com on Linux Please read VUMC's documentation to get started. The notes below supplement the documentation. Note: VUMC does allow us to use box.com ...
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Department of Biostatistics Seminar/Workshop Series A New Residual for Ordinal Outcomes Chun Li, PhD Associate Professor, Department of Biostatistics, Vanderbilt ...
caBIG Review caBIG (cancer Biomedical Informatics Grid) is a network for cancer researchers to share information. It is an open source project developed by the National ...
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Cassie Hennessy Biostatistician II E mail: cassandra.hennessy@vumc.org Phone: (615) 322 2001 Fax: (615) 343 4924 Vanderbilt University Medical CenterDepartment ...
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Main.KathrynStoltzfus 29 Jan 2018 Causal Inference for a Single Group of Causally Connected Units Under Stratified Interference Caleb Miles, PhDPostdoctoral FellowGroup ...
Ceasar Aim 2: What patient factors modify the effect of tx on function? Study questions/goals Main patient factors of interest are race and socioeconomic status: ...
Title: Continuing Education for Masters Biostatisticians Third Thursday of the month. Participants: Tebeb Gebretsadik, William Wu Brief description: The objective ...
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Department of Biostatistics Seminar/Workshop Series Scaling Bayes: Probabilistic Modeling for Large Models and Datasets Chris Fonnesbeck, PhD, Assistant Professor ...
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Clinical Trials Methodology * Trial Protocol Tool from http://www.practihc.org, the PRACTIHC collaboration Pragmatic RAndomized Controlled Trials in Health Care ...
General Statistical Ideas * Biostatistics for Biomedical Research: Primary Notes R Code for Chapters in Notes * Data science open training * Glossary of ...
Clinical and Health Research Clinic Click here for 2022, 2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014, and before. Current Notes (2023) 2023 December 7 Tara ...
Biostatistics Collaboration Plan Anesthesiology Ongoing studies Completed studies Grant Proposals Dormant Studies Monthly Updates Education Other Department ...
Functions Provided by Biostatistician Collaborators When other departments, divisions, and centers take part in the biostatistics collaboration plan, they receive ...
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%HEAD{ NAME="Benjamin Goldstein, PhD" AFFILIATION="Duke University" TITLE="Predicting Inpatient Deterioration: From Quality Improvement to Research (A Story in ...
Linux Workshop Helpful Command Line Utilities July 27, 2005 Quick Special Symbols Primer * ~ expands to your home directory (Example: cd ~) * . expands ...
Community Survey Questions These are the questions from the 2008 community survey, excluding the demographics questions. 1. My job makes good use of my skills ...
Journal Club for Analysis of Complex Datasets Sebastiani et al, Nature Genetics 37:435;2005: Genetic dissection and prognostic modeling of overt stroke in sickle ...
Computing Clinic The Computing Clinic is currently on an extended hiatus (as of 12/2013) while the department's administration structure is being reorganized. We ...
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Department of Biomedical Informatics Collaboration from Oct 2005 The following is an outline of the projects for the Department of Biomedical Informatics performed ...
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Department of Biostatistics Seminar/Workshop Series Protecting Your Data Dale Plummer, B.S. Information Systems Manager, Department of Biostatistics, Vanderbilt ...
Department of Biostatistics Seminar/Workshop Series Protecting Your Data Dale Plummer Manager, Information Systems Wednesday, September 11th, 2013 1:30 2:30pm ...
Tools for Team Work Frequently we work in teams. Team work requires that we find some way to store and share code, data, notes, comments, to do lists, documents, and ...
Reproducibility and Repeatability Reproducibility Reproducibility is the ability of an entire experiment or study to be duplicated, either by the same researcher ...
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%HEAD{ NAME="Dandan Liu, PhD" AFFILIATION="Vanderbilt University Medical Center" TITLE="Target Population Risk Prediction with Time to Event Outcome" IMAGELINK ...
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Daniel W. Byrne Director of Artificial Intelligence Research, AVAIL Advanced Vanderbilt Artificial Intelligence Laboratory Senior Associate in Biostatistics ...
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DataHippo The DataHippo file transfer utility has been shut down. Please use the VUMC Secure File Transfer tools. See https://ww2.mc.vanderbilt.edu/InfoPrivacySecurity ...
Data Protection Recommendations and Resources Department of Biostatistics Data Security Policy Introduction Given the high risk of information exposure, specific ...
This web page will be used to post information and software packages of statistical methods for data validation and audits. Our basic idea is to use information learned ...
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David Tabb Contact Info * Email: david.l.tabb #64;vanderbilt.edu * Phone Number: 936 0380 * Comment: In the laboratory there are no fustian ranks, no brummagem ...
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%HEAD{ NAME=" Dehan Kong, PhD" AFFILIATION=" Associate Professor in statistics University of Toronto" TITLE=" Fighting Noise with Noise: Causal Inference with Many ...
Department Computing Operations * Frequently Asked Questions (FAQ) * Getting Started at Vanderbilt Biostatistics (includes IT information) * Linux Workshops ...
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General Information about LaTeX and other Document Processing Tools * Comprehensive TeX Archive Network * Online LaTeX Documentation FAQ Schneider's Resources ...
Don Hong, Ph.D. (CV) Visiting Professor of Biostatistics, VUProfessor of Mathematics, ETSU Email: don.hong@vanderbilt.edu Phone: 615.936.1415 Fax: 615.936 ...
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Useful Links Relating to EBM Literature Reviews * Audit, Clinical Governance Evidence Based Medicine Resources http://www.herts.ac.uk/lis/subjects/health/ebm ...
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Department of Biostatistics Seminar/Workshop Series Big Data: From Wow to Now G. Edward Powell, PhD CEO of IPX and Chairman of eMD Wednesday, March 27, 2013 ...
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eleVate, Department of Biostatistics Vanderbilt's eleVate Program Nine Principles * Commit to excellence * Measure the important things * Build a culture ...
%HEAD{ NAME="Elias Bareinboim, PhD" AFFILIATION="Director of the Causal Artificial Intelligence (CausalAI) LaboratoryAssociate Professor of Computer SciencesThe ...
Elizabeth Koehler, MS Contact Info * Email: e.koehler #64;vanderbilt.edu * Phone: 322 7193 Education * University of Washington MS in Biostatistics, ...
%HEAD{ NAME="Ellie Murray, PhD Assistant Professor" AFFILIATION="Department of Epidemiology, Boston University School of Public Health" TITLE="Causal inference ...
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Emacs and Xemacs Information See EmacsEss Using the xemacs Package Manager You can install ESS, AucTeX, RefTeX, and other packages using Tools...Packages but you ...
Emacs, LaTeX, and UNIX Tools for Windows Users More Here Note: * The major components below are automatically available in Linux with very little effort (e.g ...
Encryption Tools for Workstations and Laptops Linux Workshop presentation 27 May 2009 On January 7, 2009, Dr. Stead broadcast an email message in which he discussed ...
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Presentations by Frank E Harrell Jr Note: Slides from more recent talks are contained in the Biostatistics for Biomedical Research handouts available at ClinStat The ...
The "Harrellverse": My Favorite Computing Tools * R: Statistical computing and graphics * R: Data manipulation and munging * debian packages: R package management ...
Department of Biostatistics Seminar/Workshop Series Sweave for Reproducible Research and Beautiful Statistical Reports Frank E. Harrell, Jr., PhD Professor of Biostatistics ...
Faculty Retreat 2015 11 13Department of Biostatistics2525 West End Avenue Archive Used during retreat: https://public.etherpad mozilla.org/p/VbiostatRetreat Vision ...
Health Services and Outcomes Research A. Questions about HSR/Outcomes Research and Biostatistics Our deliberations led to several concerns related to the targeted ...
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Fei Ye, PhD, MSPH Professor of Biostatistics and Medicine Vice Chair of Collaborative Studies Department of Biostatistics Vanderbilt University Medical Center ...
Frank E Harrell Jr, PhDProfessor of BiostatisticsFounding Chair E mail: f.harrell@vumc.org Phone: 615.322.2001 Fax: 615.343.4924 Vanderbilt University ...
Department of Biostatistics Seminar/Workshop Series Some New Directions in Statistical Computing Frank E. Harrell, Jr., PhD Professor Chair, Department of Biostatistics ...
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Frequently Asked Questions (FAQ) VUMC IT Guide to Working Remotely VUMC information about communication and collaboration tools Department Facilities and Resources ...
Recommendations, Analyses, and Data for Biostatistics Basic and Animal Research Clinic Click here for older notes Biostatistics vs. Lab Research (aka I Need 3 Patients ...
Health services research, diagnosis, and prognosis Click here for 2022, 2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014, and before. Current Notes (2023) 2023 December ...
Recommendations, Analyses, and Data for Health Services Research, Diagnosis, and Prognosis Clinic Archive Current Notes 23Dec13 Heidi Silver, Director, Vanderbilt ...
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Getting Started at VUMC Biostatistics (IT Information) This topic is a collection of Information Technology and related subjects information that one needs to know ...
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GnuPG Privacy Guard Instructions These instructions tell you how to install and configure the high security free and open source encryption/decryption software called ...
Strategic Planning Meeting Participants: J Blume, F Harrell, L Stewart, L Wang, C Yu; Regrets: Dan Byrne, J Schildcrout PEOPLE Goal(s): Growing/retaining people AND ...
Statistical Graphics for Exploring Data, Presenting Information, and Understanding Statistical Models Scripts Graphical methods are being increasingly used for exploratory ...
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HR Quarterly Department Head Meeting: 13 March 2013 Traci Nordberg's presentation: * Flex Time Reporting System similar to Duke, Hopkins and others will be implemented ...
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Department Hallway Display As of December 2013, The "Hallway Display" is not operating due to the department's move from Medical Center North to 2525 West End Avenue ...
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Review of Paul Harris' System Goal Be able to implement data management tools for a wide variety of studies, and to build a toolset that uses best security practices ...
Later Review of Paul Harris' System General impressions We met with Paul Harris on August 23,2005 to have another look at his tools set. It has matured in the year ...
Health Services and Outcomes Research A. Questions about HSR/Outcomes Research and Biostatistics Our deliberations led to several concerns related to the targeted ...
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Henry (Hank) Domenico Principal Biostatistician E mail: henry.domenico@vumc.orgPhone: 615.875.3119Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
Department of Biostatistics Seminar/Workshop Series Problems in Non Stationary Multivariate Time Series with Applications in Brain Signals Hernando Ombao, PhD Professor ...
Department of Biostatistics Seminar/Workshop Series A Poisson Bayesian Kernel Model for the Prediction of Disruptions Hiba Baroud, PhD Assistant Professor, Civil ...
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How to Name a Wiki Topic This topic is designed to help you choose a good name for your new wiki topic/page. It's easy and will make using the wiki easier for others ...
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Hui Nian Biostatistician III E mail: hui.nian@vanderbilt.edu Phone: 615.875.3004 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment of Biostatistics ...
Basic Research IT Infrastructure Support Needs * Network * Stability, especially e mail servers * Medical Center Exchange servers are losing emails ...
Main.BobMcClellan 21 May 2021 CQS Developer OnBoarding Included here is a listing of programs and links that are useful when coming aboard as a CQS developer. OS ...
IGP 304: Stata Labs Some words from the instructor Knowing the software is vital to your learning of statistics and your course performance. If you learn statistics ...
Chun's course blog Beginning words: Blogging is totally new to me. I try to experiment this so that I can help you understand the course and statistics in general ...
Department of Biostatistics Seminar/Workshop Series Ruminations on Statistical Evidence Jeffrey Blume, PhD Associate Professor, Department of Biostatistics Vanderbilt ...
Department of Biostatistics Seminar/Workshop Series Examining Accumulating Evidence: A Likelihood Approach Jeffrey D. Blume, PhD Associate Professor, Director ...
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JabRef JabRef is a comprehensive java based BibTeX reference database manager that also imports references from Pubmed and other sources and can export to a variety ...
function hidedisplay(elementClass){ var x = document.getElementsByClassName(elementClass); for (i = 0; i /* Change font on whole page*/ html body { font family:Roboto ...
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%HEAD{ NAME="C. Jason Liang, PhD" AFFILIATION="National Institute of Allergery and Infectious Diseases, NIH" TITLE="Methods for evaluating the time varying prognostic ...
Jay Snoddy Department of Biomedical Informatics (Started Nov 1, 2005) Contact Information * Email: j.snoddy #64;vanderbilt.edu * Phone Number: (to be determined ...
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Department of Biostatistics Seminar/Workshop Series R Package Development with RStudio Jeff Horner, B.S. Computer Systems Analyst III, Department of Biostatistics ...
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My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
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%HEAD{ NAME="Jonathan Mosley, PhD" AFFILIATION="Vanderbilt University School of Medicine" TITLE="Polygenic risk scores: Ready for the clinics?" IMAGELINK="https ...
Josh DeClercq Biostatistician II email: josh.declercq "at" vumc.org Vanderbilt University Medical Center Department of Biostatistics 2525 West End Ave., Ste ...
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My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
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%HEAD{ NAME="Julian Wolfson, PhD" AFFILIATION="University of Minnesota" TITLE="Unlocking the Actome: Characterizing Human Activity and Behavior Patterns Using ...
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Welcome to the Department of Biostatistics! Here are some useful resources for you to learn about R, Sweave/LaTeX, longitudinal data analysis, survival analysis and ...
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My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
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How to use knitr knitr html report Template Introduction knitr is a newer way to create reproducible documents with R and LaTeX. It has several advantages over ...
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Department of Biostatistics Seminar/Workshop Series Facilitating Reproducible Research through Direct Connection of Data Analysis with Manuscript Preparation in ...
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Learning Open Office * (announcements?) * (suggestions for future LinuxWorkshops?) * (welcome, buzzword bingo and fabulous prize) For a long time, we have ...
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Linda WilsonAdministrative Manager Email: linda.l.wilson@vanderbilt.eduPhone: 615.875.6914Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment of Biostatistics2525 ...
Common Graphics Utilities for Linux ImageMagick Online Documentation: http://www.imagemagick.org/script/command line tools.php How to downsize a whole directory ...
Linux Workshops NOTE The Linux Workshops are no longer being presented. This page is being retained so that we can remember the links to the materials used in previous ...
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%HEAD{ NAME="Manisha Desai, PhD" AFFILIATION="Kim and Ping Li Professor of Medicine, Biomedical Data Science, and of Epidemiology and Population Health Associate ...
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My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
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%HEAD{ NAME="Maria Cuellar, PhD" AFFILIATION="University of Pennsylvania" TITLE="A nonparametric projection based estimator for the probability of causation" ...
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Department of Biostatistics Seminar/Workshop Series Wikis and Collaborative Tools for Professional Development Mary Banach, PhD, MPH Program Manager for CTSPedia ...
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Reweighted Mahalanobis Distance Matching in Observational Studies and Randomized Trials Matched Randomization R Package nbpMatching The current version of the R package ...
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Curriculum vitae, last updated 2021 01 25: MShotwellCV.pdf Optimal design for a challenge response experiment. Right click the graphic below to 'view image' or 'open ...
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Lucy D'Agostino McGowan Biostatistics PhD Student “There are those wholook at things the way they areand ask why…I dream of thingsthat never were, and ask why not ...
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My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
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Demonstration and Review of Metaclinic System Basis Software Oracle, Apache, mod_perl (increases speed by maintaining Perl and metadata in memory), Javascript Features ...
Michael Matheny, MD, MS, MPH Assistant Professor of Biostatistics E mail: michael.matheny@Vanderbilt.edu Website: VU SOM, Department of Medicine Vanderbilt University ...
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Department of Biostatistics Seminar/Workshop Series Biostatistics Student Research Forum: Wavelet Based Techniques for fMRI Data Analysis Minchun Zhou, PhD Candidate ...
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Linux Workshop Modding Mozilla Themes extensions can enhance Firefox and Thunderbird June 29, 2005 * The web site for Firefox and Thunderbird extensions is ...
Health services research, diagnosis, and prognosis Click here for 2023, 2022, 2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014, and before. Current Notes (2024) 2024 ...
Recommendations, Analyses, and Data for Health Services Research, Diagnosis, and Prognosis Clinic Notes 2017 2017 11 13 Claire, Lo. Medical student. I have data ...
Recommendations, Analyses, and Data for Health Services Research, Diagnosis, and Prognosis Clinic Notes 2018 2018 12 17 Shawniqua Williams Roberson, Neurology ...
Recommendations, Analyses, and Data for Health Services Research, Diagnosis, and Prognosis Clinic Notes 2019 2019 12 16 Ronnie Beaulieu, Infectious Diseases ...
Recommendations, Analyses, and Data for Health Services Research, Diagnosis, and Prognosis Clinic Notes 2021 2021 November 29 Megan Lancaster (Dan Roden), Cardiology ...
Health services research, diagnosis, and prognosis Notes (2022) 2022 December 12 Paras Karmacharya (Leslie J. Crofford), Rheumatology Determine the associations ...
Health services research, diagnosis, and prognosis Notes (2023) 2023 December 11 Megan Passarelle Thu Can (Sarah Welch), Acute Rehabilitation We are studying ...
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Main.KathrynStoltzfus 27 Feb 2018 Nature Inspired metaheuristic algorithms for finding optimal designs for complex biostatistical problems Algorithms are practical ...
IS Procedures for New Employees This is a list of things to do before a new employee arrives in our department. 1 Find out where the new employee will be housed ...
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%HEAD{ NAME="Nick Strayer, PhD" AFFILIATION="Vanderbilt University Medical Center" TITLE="Taking a network view of EHR and Biobank data to find explainable multivariate ...
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Ning Chen, M.S. Biostatistician II E mail: ning.chen@vanderbilt.edu Phone: (615) 875 3327 Fax: (615) 343 4924 S 2323 Medical Center North (MCN) Department of Biostatistics ...
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Nonbipartite Matching Web Application A web application to perform nonbipartite matching is found at http://data.vanderbilt.edu/rapache/matching . The webapp implements ...
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Omics Data Clinic Notes The notes and questions are from Constantin Aliferis with a few responses by FrankHarrell. Handling the demand side of the equation It seems ...
Open Office A good source for open office help can be found at this blog. Major benefits of using Open Office * platform independent * compressed file size ...
MySQL tools * mysqlnavigator use apt get install mysql navigator Using OpenOffice as a front end to MySQL database using ODBC OpenOffice is running on user's ...
Summary of the collaboration plan activities with the Department of Ophthalmology Chun Li, Ph.D. Pengcheng Lu, M.S. Last update: June 11, 2009 From January 2008, Mr ...
Exporting Microsoft Outlook Email Folders and Contacts into .mbox and .vcard Format Below are step by step instructions you can follow to reliably export specific ...
A PROSPECTIVE COHORT EVALUATION OF A BONE BRUISE TWELVE YAERS AFTER ACL RECONSTRUCTION Bryan Hanpsiak Kurt Spindler Rick Parker Bradford Richmond Rothrock Calabrese ...
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Main.BenSaville 06 Nov 2009 Dept. of Pediatrics Collaborations, Ben Saville, Ph.D., Meng Xu, M.S. This page documents the activity of the collaboration plan between ...
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Using the Pidgin Instant Messaging Client with Lync By now everyone should have their new Polycom CX600 phones installed. When the phones were installed, each department ...
%HEAD{ NAME="Benjamin Goldstein, PhD" AFFILIATION="Duke University" TITLE="Predicting Inpatient Deterioration: From Quality Improvement to Research (A story in ...
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Protecting Your Data Information in this topic has been superseded by the Department of Biostatistics Data Security Policy topic. Introduction Certain kinds of information ...
Protein Alignment Algorithms Here's some notes and links to protein alignment algorithms I've found. Here's the Wikipedia page about sequence alignment. Terms Here ...
Protein Databanks Below is a list of protein databanks. Some databanks are categorized into protein families, whereas others are not. Family Databanks Prosite ...
Scientific/Quantitative Methods Needed to be Covered in Undergraduate Medical Education History, Methods, and Strategy of Science The scientific method is an enduring ...
Graphics for Clinical Trials Frank E Harrell JrVanderbilt Department of BiostatisticsOffice of Biostatistics FDA CDER DIA/FDA Statistics Forum, North Bethesda MD ...
The RExcel Package For additional information on the RExcel package, see the statconn wiki (useful), statconn (not so useful), R packages (search for the word excel ...
June 4 6 2001 1=disagree 5=agree * The course met the objectives advertised on Insightful's websight and flyers * 5: 5/9 4: 4/9 * has provided me with ...
RMySQL RMySQL is a database interface and MySQL driver for R. This version complies with the database interface definition as implemented in the package DBI 0.2 2 ...
Department of Biostatistics Seminar/Workshop Series R Package Development with GitHub Cole Beck, B.S. Computer Systems Analyst, Department of Biostatistics The ...
Methods of Retrieving Datasets Most of the datasets on this site are in the S dumpdata format (file suffix of .sdd) and R compressed save() file format (suffix of ...
R and VIM Syntax Highlighting and Indenting I modified the existing R vim syntax file, and created a vim R indent file since R's indention in vim was broken. Below ...
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%HEAD{ NAME="Rafael Irizarry, PhD" AFFILIATION="Chair of the Department of Data Sciences at the Dana Farber Cancer Institute Professor of Applied Statistics at ...
RailsConf 2007 Below is a collection of links and notes from RailsConf this year. A lot of the slides from the various presentations can be found here. Enjoy! Keynotes ...
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Using Rapache for Web Services R is fast becoming the language of choice for statistical computing, and researchers are quickly transferring their cutting edge research ...
Vanderbilt Research Data Management Discussion Group Goals To evaluate data entry and management tools that could be useful for internal clinical trials, multi center ...
Reproducible Statistical Analysis and Reporting Activities and Goals in the Department of Biostatistics In the Vanderbilt Department of Biostatistics, reproducible ...
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Department of Biostatistics Seminar/Workshop Series Record Linkage with Coupler Jeremy Stephens, BS Computer Systems Analyst II, Department of Biostatistics, Vanderbilt ...
Many texts are excellent sources of knowledge about individual statistical tools (general linear models, survival analysis, missing data, etc.), but the art of data ...
This seminar covers different mechanisms to view and move files to remote locations. There's a nice write up already available on our site: FrequentlyAskedQuestionsFAQ ...
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Renee Torres Biostatistician I E mail: renee.torres@vanderbilt.edu Phone: 615.322.6103 Fax: 615.343.4924Vanderbilt University School of MedicineDepartment of ...
Renv Renv (pronounced "arr env") is a tool for installing multiple versions of R alongside each other. Why it exists A new version of R is released every few months ...
Reproducible Research Tutorial Introduction Reproducible research (RR) is the practice of conducting and presenting research in such a way that others, and yourself ...
Research Database Goals The research database discussion group topic is the parent of this topic. Server Installation * RSDBdevServInst * Our Development Page ...
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SAS for Linux As of 1 May 2017, all of this topic is obsolete. It is being left here for reference purposes. See SasVumc for current information. Introduction ...
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A Phase I Trial of Daily Intravenous SJG 136 in Patients with Advanced Solid Tumors Collaborators Lynn.Matrisian #64;Vanderbilt.edu, Mace.Rothenberg #64;Vanderbilt ...
The Department of Biostatistics Vanderbilt University School of Medicine Statistical Thinking in Biomedical Research October 7, 14, 21, 28, November 4, 11, 18 2004 ...
Section 2: Tools for Formal Statistical Inference Instructor: Tatsuki Koyama The statistical inferences needed to answer many of the scientific questions addressed ...
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Samuel Nwosu, MS Biostatistician IV E mail: sam.nwosu@vanderbilt.edu MCN Phone: 615.875.6971 VA Phone: 615.873.8016 Vanderbilt University School of MedicineDepartment ...
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%HEAD{ NAME=" Sean L. Simpson, PhD" AFFILIATION=" Professor Department of Biostatistics and Data Science Wake Forest University" TITLE=" Regression Frameworks ...
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Seth Martin Business Manager Email: seth.martin@vanderbilt.eduPhone: 615.875.5619Fax: 615.343.4924 _Vanderbilt University School of MedicineDepartment of Biostatistics2525 ...
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Shawn Garbett Assistant Faculty E mail: shawn.garbett at vumc.org Office: (615) 875 7481 Nickname: Garp About Me I graduated from Penn State in August ...
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Shiny Presentation Notes Acknowledgements Much of this presentation comes from Getting started with ShinyApps.io and the Teach yourself Shiny tutorial. Using Shiny ...
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%HEAD{ NAME="Simon Vandekar, PhD" AFFILIATION="Vanderbilt University Medical Center" TITLE="Some New Developments for Neuroimaging Inference Using the PBJ R Package ...
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Quarterly Staff Meetings All meetings located in 3131 MRBIII unless otherwise noted. 2007 January 30 (10:00am) * Good News * Meeting Date and Time * Personnel ...
Statistical Computing * Good enough practices in scientific computing * useR! 2012 Vanderbilt University, Nashville, June 2012 * R and S Plus software and ...
S for Statistical Data Analysis and Graphics Frank E. Harrell, Jr. (f.harrell@vanderbilt.edu) Professor of Biostatistics and Statistics Chair, Department of Biostatistics ...
Server Information for statcomp2 and statcomp3 Description Statcomp2 and statcomp3 are 64 bit Linux servers equipped with, at least, Intel Xeon processors running ...
General Advice This is currently a work in progress as I slowly build up my feedly feed. I'm not restricting the viewing of the page, but I'll officially open it later ...
Statistical Reporting, Linking S Output with Report Documents, Literate Programming, Managing Analyses, and Documenting Programs and Data Reproducible Research ...
Some Models for Incorporating Software Usage in Teaching Non Statisticians This is a list, in no particular order, of ways to incorporate statistical software into ...
Overview and Intended Audience of Statistical Thinking in Biomedical Research The goal of the seven 1.5 hour session short course is to present the biostatistical ...
The Statistical Computing Series The Statistical Computing Series is a monthly event for learning various aspects of modern statistical computing from practitioners ...
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In your opinion, what steps should we take to implement eleVate? Employee Comment: Simplify the eleVate to a few easy to understand and easy to implement rules of ...
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Svetlana K. Eden, MS Biostatistician III /Svetlana.JPG E mail: svetlana.eden@vanderbilt.edu Phone: 615.343.7014 Fax: 615.343.4924 Vanderbilt University School ...
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Statistical Thinking in Biomedical Research Schedule Note: Measuring change is currently listed as a topic in both Sections 1 and 5. It will only be briefly discussed ...
function hidedisplay(elementClass){ var x = document.getElementsByClassName(elementClass); for (i = 0; i /* Change font on whole page*/ html body { font family:Roboto ...
Clinical and Health Research Clinic Click here for 2023, 2022, 2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014, and before. Current Notes (2024) 2024 April 18 Eesha ...
Data and Analysis for Clinical and Health Research Clinic Notes (2020) 2020 December 17 Amany Alshibli, Bantayehu Sileshi, Anesthesiology * We are conducting ...
Data and Analysis for Clinical and Health Research Clinic Notes (2021) 2021 December 09 Marianna LaNoue, VUSN * I have been wrestling with the issue of statistical ...
Clinical and Health Research Clinic Notes (2022) 2022 December 1 Jonah Fox (Bassel W. Abou Khalil), Neurology Epilepsy Using data from the Human Epilepsy Project ...
Clinical and Health Research Clinic Notes (2023) 2023 December 7 Tara Helmer, VICTR We are working with a PI who wants to use My Health at Vanderbilt to recruit ...
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(Updated for Firfox 1.0) Using Xemacs to Edit Web Pages in Twiki * Launch mozilla firefox * Go to http://www.extensionsmirror.nl/index.php?showtopic=70 * ...
Outline for Linux Workshop January 26, 2005 January 25, 2006 January 30, 2008 Note that the 2007 version of this workshop can be found at MoreTwikiWorkShop. ...
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My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
/* Ensure header doesn't get too wonky; / / 1024px gets 98% of 'maximized' browsers, according to: / / http://www.w3schools.com/browsers/browsers_display.asp ...
Tips on Using Firefox Here are some tips about using Firefox on Linux. Keyboard Shortcuts Some useful keyboard shortcuts: Shortcut Action Ctrl T Open a ...
Summary of Collaborative Work with Institute for Global Health last updated 4 April 2013 NEW PROJECTS * Stephanie Duda and Mary Lou Lindegren, Faculty * ...
Meeting 21Nov13 Present: Thornton Wells, Wang, Urbano,Tapp, Dietrich, Li Agenda: Discuss focus and organization of new 'Biostatistics and Bioinformatics Core' in U54 ...
R Packages To Install When Updating R install.packages("Design") # rms should be used over Design install.packages("rms") install.packages("MASS") install.packages ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
Viking's Notes Screen To change the escape sequence from C a to `, add this to your .screenrc: escape `` Kubuntu on MacBook Helpful Tutorial https://help.ubuntu ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
Department of Biostatistics Seminar/Workshop Series Statistical Methods for DNA Resequencing Analysis in Disease Gene Studies Wenyi Wang, Ph.D. Stanford Genome ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
Materials for William Dupont Important Components of ASA Nomination Guidelines for Letters of Support Full ASA Guidelines * Letters of support are generally ...
Web Visualization User Manual The following sections hope to provide enough information to setup a user new to our web visualization tools for accessing his data ...
Biostatistics applications in surgery, anesthesiology, and emergency and critical care medicine Clinic Notes (2015) 2015 December 16 Jason Singer, Medical student ...
Biostatistics applications in surgery, anesthesiology, and emergency and critical care medicine Clinic Notes (2016) 2016 December 28 canceled due to holiday 2016 ...
Biostatistics applications in surgery, anesthesiology, and emergency and critical care medicine Clinic Notes (2020) 2020 December 16 George Lin (Alex Langerman ...
Surgery, anesthesiology, and emergency and critical care medicine The Biostatistics Clinic on Wednesdays is dedicated to biostatistics applications in surgery, anesthesiology ...
Notes for Wednesday Biostatistics Clinic Archive Current Notes 2013 December 11 Catherine Bulka, Anesthesiology * Wants to demonstrate/examine group balance ...
Wei Wang, MS, PhD Biostatistician II E mail: wei.wang.3 #64;vanderbilt.edu Phone: 615.322.7304 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
Welcome to Vanderbilt 30 day follow up Survey 1. Did you have all the maps and directions to get to the Lot 73? 2. Did you have all the maps and directions to get ...
Commenting Guidelines * Add class/function header at time of creation * Use summary to describe a function/class. * Use value to describe a property ...
Web Visual Tool (First stage) Goals * Build a database to store WFCCM results * Create web interfaces to retrieve WFCCM results (without visual tools) Tasks ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
Recommended Software for Wilcoxon Mann Whitney Test and Associated Confidence Interval Use the coin package in R which also requires the modeltools and mvtnorm packages ...
/will australia1.jpg Will Gray Sr Application Developer Vanderbilt Center for Quantitative Sciences 571 Preston Research Bldg Nashville, TN 37232 6848 w.gray ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
Working Remotely The information in this topic is superseded by the VUMC IT Guide to Working Remotely. Here you will find some recommendations and procedures for ...
Tools for the Scientific Writer Geopen George, Swan Judith.The Science of Scientific Writing. American Scientist 1990; Nov Dec. http://www.americanscientist.org/template ...
Wu Gong Senior Biostatistician Wu.Gong@vumc.org Vanderbilt University School of Medicine Department of Biostatistics 2525 West End Ste. 11113F Nashville, TN 37203 ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
%HEAD{ NAME="Xinjun Wang, PhD Candidate in Biostatistics" AFFILIATION="University of Pittsburgh" TITLE="Statistical Learning and Analysis of Single Cell Multi ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
Xue Han, M.P.H. M.S. Biostatistician III E mail: xue.han@vanderbilt.eduPhone: (615) 322 2270Fax: (615) 343 4924 Vanderbilt University School of MedicineDepartment ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
Xulei (Shirley) Liu Biostatistician IV E mail: xulei.liu@vanderbilt.edu Phone: 615.322.9362Fax: 615.343.4924 Vanderbilt University School of Medicine Department ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...
My Links * BeginnersStartHere view a short introductory presentation on Foswiki for beginners * WelcomeGuest starting points on Foswiki * UsersGuide ...