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---++ This Page is Obsolete. It is replaced by StatCompCourse and StatGraphCourse ----- ---+ Statistical Computing and Graphics * [[ProgramingPrereq][Computer programming prerequisites]] * [[class.html][Syllabus]], [[http://biostat.mc.vanderbilt.edu/twiki/pub/Main/StatCompCourse/sCompGraph.pdf][course notes]], and book by [[http://biostat.mc.vanderbilt.edu/twiki/pub/Main/StatCompCourse/sintro.pdf][Alzola and Harrell]]. * [[../honor.html][Honor code information]] * [[StatCompConcepts][Concepts]] to master * [[http://www.insightful.com/products/product.asp?PID=3][Manuals]] from Insightful Corp. * [[http://cran.r-project.org/other-docs.html][Free books for learning the R language]], which is similar to S-Plus * [[http://biostat.mc.vanderbilt.edu/s/finder/finder.html R/S-Plus function finder]] * A compendium of S [[http://www.ku.edu/~pauljohn/R/Rtips.html][programming examples]] compiled by Paul Johnson * [[scripts][Scripts and Output]] used in Class and Labs * Class [[StatCompGraphDisc][discussion board]] * [[../feedback.feh.htm][Anonymous feedback to instructor]] * [[hw.html][Homework and Project Assignments]] * Students' [[studentPapers/graphExamples/fall02][good and bad graphics examples]] * [[utilities/rsubmit.clb][<t>rsubmit</t> macro]] for submitting code from the [[http://www.notetab.com][<t>NoteTab</t>]] editor to R under Windows, and [[utilities/rsubmit.txt][instructions]] for installing and using the macro in <nop>=NoteTab= * Corrected version of [[data/exenvirn.sd2][exenvirn.sd2]] SAS dataset for importing, for Assignment 3. * [[lab.html][Lab Assignments]] * [[utilities/s.bat][DOS batch file]] for running S-Plus 6 in batch mode, for creating output =.txt= files in which the placement of comments is preserved. The file assumes S-Plus is located at =c:\Program Files\splus61= and that your project area is in =c:\temp= (you should edit this to point to your real project area). * Small Excel file for learning how to import data [[hw3.xls][here]]. * [[jcetable.ssc][S-Plus script]] for creating data for Table 5 of Galobardes _et al_. for final project * Corrected data and data dictionaries from [[../Rosner][Rosner]] and some associated S-Plus data frames (dumpdata.ssd file). Save to a temporary file, invoke S-Plus from your project area, and issue a command such as data.restore('full dumpdata file name'), i.e., data.restore('directory/dumpdata.sdd'). If you saved the file under the sdd suffix you can use the File .. Import .. From File .. Files of Type S-Plus Transport Files menus. * [[DataSets][Datasets]] useful in learning biostatistical modeling techniques (UVa) * For an S-Plus script demonstrating how to draw random numbers, the central limit theorem, and binomial probabilities, click [[distributions.ssc][here]]. * [[../../s/doc/gui.graphics.tricks.pdf][Tricks for using the S-Plus 4.5 Graphical User Interface to Produce Graphics]]. Pam Goodman, MathSoft DAPD, 9 October 1998; 19 pages, color, PDF * Information about slide rules from [[http://www.hpmuseum.org/prehp.htm][HP]], [[http://www.comcen.com.au/~adavie/javaslide/javaslide.html][Davie and Kessler]], and [[http://www.eminent.demon.co.uk/sliderul.htm][Peter Fox]] (includes some good material about logarithms). For four examples of circular slide rules from William Thornton click here: [[http://www.lib.virginia.edu/speccol/exhibits/hoos/images/sliderule.JPG][1]] [[http://www.lib.virginia.edu/speccol/exhibits/hoos/images/sliderule1.JPG][2]] [[http://www.lib.virginia.edu/speccol/exhibits/hoos/images/sliderule2.jpg][3]] [[http://www.lib.virginia.edu/speccol/exhibits/hoos/images/sliderule3.JPG][4]] * Examples of color image plots for 3 variables <ol dir="ltr"> * [[image.stroke.pdf][Relationship between diastolic and systolic blood pressure and the risk of disabling stroke from thrombolytic therapy for myocardial infarction]] * [[image.sepsis.pdf][Relationship between coma score and daily urine output on median survival time for ICU patients with sepsis]] * Examples of "live" Java graphlets produced by S-Plus 6.0 on Linux/UNIX: * [[splusjava/fuel.html][Fuel analysis]] * [[splusjava/futures.html][Futures analysis]] * [[splusjava/identify.html][Example with multiple graph pages and actions based on clicking selected graph regions]] * [[splusjava/map.html][An interactive map]] ------ ---++ WWW Statistical Computing Applications using R * A rather amazing implementation of [[http://ssnt.ism.ac.jp/inets2/title.html][time series analysis based on R and Javascript]]. This web server creates separate browser windows for data entry, graphics, and procedure selection. These windows are dynamic. For example, after entering data there is no =submit= button to submit the data. The procedure selection window is used to start the analysis, which uses the current values in the data window. * The [[http://www.math.montana.edu/Rweb/][Rweb]] system (mirrored [[http://xerxes.sph.umich.edu:2000/cgi-bin/Rweb/buildModules.cgi][here]]). * An R web server for [[http://www.stat.wmich.edu/slab/RGLM][robust rank-based linear models]] * [[http://stats.mth.uea.ac.uk/Rcgi/][Rcgi]], a "lighter alternative to Rweb with more 'reasonable' dependencies" * Doug Bates' presentation [[http://www.stat.wisc.edu/~bates/JSM2001.pdf][Using Open Source Software to Teach Mathematical Statistics]], with examples of distribution fitting using maximum likelihood, profile likelihood plotting, and other statistical calculations * Notes from John Nash's [[http://macnash.admin.uottawa.ca/~sso][Workshop on Open Source and Proprietary Statistical Software]] * Other CGI examples: [[http://www.psyctc.org/stats/R/binconf1.html][here]], [[http://www.psyctc.org/stats/R/binconf2.html][here]], and [[http://tango.stat.unipd.it/SN/sn-fit.html][here]]. * The [[http://cran.us.r-project.org/src/contrib/PACKAGES.html#CGIwithR][CGIwithR]] package ------ ---++ Short Course * [[StatCompGraphShortCourse][S for Statistical Data Analysis and Graphics]] - Detailed description of a three-day short course by FE Harrell. To be offered May 28-30 2003 (Philadelphia) for [[http://www.insightful.com/services/schedule.asp][Insightful Corp.]] Click [[Shortcourse.hw.pdf][here]] for laboratory exercises for this course. Click [[scripts/2day.may00.txt][here]] for scripts developed in class during the May 2000 course or [[scripts/2day.aug00.txt][here]] for the August 2000 course. Click [[scripts/3day.may01.txt][here]] for scripts used in the May 30 - June 1 2001 3-day Insightful short course in Washington D.C. Click [[scripts/3day.jun02.txt][here]] for the June 2002 course. * [[graphics.shortcourse.txt][Statistical Graphics for Exploring Data, Presenting Information, and Understanding Statistical Models]]. S-Plus International User Conference, Philadelphia, 16Oct01. Click [[scripts/1day.graphics.oct01.txt][here]] for the S-Plus script developed in this course. * Click [[scripts/1day.statcomp.oct00.txt][here]] for script developed in the one-day version of the course given at the S-Plus Users Conference, Seattle, October 2000. ------ ---++ Resources for Learning Computer Languages * [[http://www.msen.com/~clif/Tutor2b4.exe][Tcl Tutor]], a self-extracting =.exe= file for Windows for learning the [[http://www.msen.com/~clif/TclTutor.html][Tcl]] language ------ ---++ Utilities for Converting Graphics Files to Other Formats * The [[http://www.pstoedit.net][=pstoedit=]] program for Windows/NT, Linux, and UNIX. This program can convert postscript graphics files to a variety of other formats for editing and other purposes. The Windows version includes a Microsoft Office import plug-in for importing postscript files into documents. * [[http://www.imagemagick.org/][ImageMagick]], an impressive program for converting between 68 graphics file formats. ------ * Web site for [[http://www2.active.ch/~krause.a/doc/splus-book/][Kraus and Olson's book]] * Jeff Banfield's [[http://www.math.montana.edu/~umsfjban/Courses/Stat438/][Graphical Data Analysis]] course (Montana State U.) * Dalhousie University's [[http://www.mscs.dal.ca/tutorials.html][Software Tutorials]], including one on S-Plus * Michael Friendly's [[http://www.math.yorku.ca/SCS/Gallery/][Gallery of Data Visualization]] - The Best and Worst of Statistical Graphics * Gary Klass' [[http://lilt.ilstu.edu/gmklass/pos138/datadisplay/badchart.htm][How to Construct Bad Charts and Graphs]] * Carnegie Mellon University [[http://www.cs.cmu.edu/groups/sage SAGE]] system for automated graphics and explanation, including a rendition of Napoleon's march * A famous example of bad design: The [[PalmVoteBallotConfusion.gif][Palm Beach County Florida November 2000 Ballot]] * An excellent interactive graphic from a [[http://graphics8.nytimes.com/packages/flash/politics/20080603_MARGINS_GRAPHIC/margins.swf democratic primary exit poll]] * [[levine.pdf][Graphics for Clinical Trials]] by Jonathan Levine, Senior Scientist, [[http://www.Lincolntechnologies.com][Lincoln Technologies, Inc.]] (pdf, 420K, produced using CrossGraphs from [[http://www.belmont.com][Belmont Research]] or S-Plus) * Sample [[http://www.biostat.wisc.edu/Clinical_Trials/pdf/report1.pdf][graphical and tabular clinical trial report]] from the Statistical Data Analysis Center, Dept. of Biostatistics and Medical Informatics, U. Wisconsin-Madison. * [[http://cm.bell-labs.com/cm/ms/departments/sia/wsc/index.html][Bill Cleveland's Web Site]], including S language scripts used in producing his book _Visualizing Data_ * [[http://cm.bell-labs.com/cm/ms/who/cocteau/newsletter/][Statistical Computing & Graphics Newsletter]] * Abstracts and papers from the [[http://www.ci.tuwien.ac.at/Conferences/DSC-2001/Proceedings/][ 2nd International Workshop on Distributed Statistical Computing, Vienna]] * R-based site for [[http://www.stat.wmich.edu/slab/RGLM][rank-based linear models]] by Abebe, Crimin, McKean, Haas, Vidmar (see _Drug Information Journal_ 35:947-971, 2001). * Statistical computing software list (including a list of free packages) from [[http://www.statsci.org/statcomp.html][Statistical Science Web]] -- Main.FrankHarrell - 02 Feb 2004
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Topic revision: r5 - 01 Sep 2008,
FrankHarrell
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