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<table border="1" cellpadding="0" cellspacing="1"> <tbody> <tr> <td> ---+++ ---+++ %BLACK% <span style="background-color: transparent; font-size: 18.85px;">Qi Liu, Ph.D.</span>%ENDCOLOR% ---+++ ---+++ %BLACK%Associate Professor of Bioinformatics%ENDCOLOR% ---+++ %BLACK%Technical Director of VANGARD%ENDCOLOR% ---+++ ---+++ </td> <td><img align="middle" alt="Qi_Liu.jpg" height="420" src="%ATTACHURL%/Qi_Liu.jpg" title="Qi_Liu.jpg" width="300" /></td> </tr> <tr> <td> E-mail: qi.liu@vanderbilt.edu; qi.liu@vumc.org <span style="background-color: transparent;">Phone: 615.322.6618</span> <span style="background-color: transparent;">Fax: 615.936.2602</span> Office: 497A PRB, 2220 Pierce Avenue Nashville, TN, 37232</td> <td>Vanderbilt University School of Medicine<br />Department of Biostatistics<br />2525 West End, Ste. 11126<br />Nashville, TN 37203-2158</td> </tr> </tbody> </table> ---++ ---++ <span class="WYSIWYG_COLOR" style="background-color: transparent; font-size: 23.1px; color: royalblue;">Research Interests</span> Dr. Liu's research focuses on integrating multi-omics data to address fundamental biological questions. * Spatial omics data analysis * Single-cell omics data analysis * Single-cell Multiomics integration * transcriptomics, genomics and epigenomics data * Transcriptional and posttranscriptional regulation * Enhancer-mediated regulation * and More ---++ ---++ ---++ <span style="color: royalblue;">Softwares and Databases</span> * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Spatial pattern and co-localization</span></b></span></i></span> <span style="background-color: transparent;"> spaGene: </span> https://github.com/liuqivandy/SpaGene * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Quantify cellular composition diversity across single cell transcriptomics data</span></b></span></i></span> <span style="background-color: transparent;"> scUniFrac: </span> [[https://github.com/liuqivandy/scUnifrac][<span style="background-color: transparent;">https://github.com/liuqivandy/scUnifrac</span>]] * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Quality control of multiple single cell transcriptomics data</span></b></span></i></span> <span style="background-color: transparent;"> scRNABatchQC: </span> https://github.com/liuqivandy/scRNABatchQC * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Multi-resolution cell type annotation for single cell transcriptomics data</span></b></span></i></span> <span style="background-color: transparent;"> scMRMA: [[https://github.com/JiaLiVUMC/scMRMA][https://github.com/JiaLiVUMC/scMRMA ]]</span> * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Predict TSS for human intergenic miRNA using GRO/PRO-seq data</span></b></span></i></span> <span style="background-color: transparent;"> mirSTP: [[http://bioinfo.vanderbilt.edu/mirSTP/][http://bioinfo.vanderbilt.edu/mirSTP/ ]]</span> * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Analyze Nascent transcriptomics profile from GRO/PRO-Seq data</span></b></span></i></span> <span style="background-color: transparent;">NRSA: </span> [[http://bioinfo.vanderbilt.edu/NRSA/][<span style="background-color: transparent;">http://bioinfo.vanderbilt.edu/NRSA/</span>]] * <i><span class="WYSIWYG_COLOR" style="color: darkcyan;"><b><span style="background-color: transparent;">Human active enhancers database to interpret regulatory variants</span></b></span></i> <span style="background-color: transparent;">HACER: [[http://bioinfo.vanderbilt.edu/AE/HACER/][http://bioinfo.vanderbilt.edu/AE/HACER/ ]]</span> * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span style="background-color: transparent;">Immunotherapy-related genomics portal in Melanoma</span></b></span></i></span> <span style="background-color: transparent;">Immu-Mela: </span> [[http://bioinfo.vanderbilt.edu/database/Immu-Mela/][<span style="background-color: transparent;">http://bioinfo.vanderbilt.edu/database/Immu-Mela/</span>]] * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Immunotherapy-related genomics portal in Pan-cancer studies</span></b></span></i></span> <span style="background-color: transparent;"> Cancer-Immu: </span> <span style="color: lightskyblue;"> [[http://bioinfo.vanderbilt.edu/database/Cancer-Immu/][<span style="text-decoration-line: underline; background-color: transparent;">http://bioinfo.vanderbilt.edu/database/Cancer-Immu/</span>]]</span> ---++ ---++ <span style="color: royalblue;">Publications</span> Google Scholar: [[https://scholar.google.com/citations?user=iDa_EYUAAAAJ&hl=en]]
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Topic revision: r4 - 27 Apr 2022,
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