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<span style="background-color: transparent; font-size: 18.85px;">Qi Liu, Ph.D.</span>%ENDCOLOR%
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---+++ %BLACK% Professor of Bioinformatics%ENDCOLOR%
---+++ %BLACK%Technical Director of VANGARD%ENDCOLOR%
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</td> <td><img align="middle" alt="Qi_Liu.jpg" height="420" src="%ATTACHURL%/Qi_Liu.jpg" title="Qi_Liu.jpg" width="300" /></td> </tr> <tr> <td>

E-mail: qi.liu@vanderbilt.edu; qi.liu@vumc.org

<span style="background-color: transparent;">Phone: 615.322.6618</span>

<span style="background-color: transparent;">Fax: 615.936.2602</span>

Office: Room 10114, 2525 West End Ave

Nashville, TN, 37203</td> <td>Vanderbilt University School of Medicine<br />Department of Biostatistics<br />2525 West End, Ste. 11126<br />Nashville, TN 37203-2158</td> </tr> </tbody> </table>
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---++ <span class="WYSIWYG_COLOR" style="background-color: transparent; font-size: 23.1px; color: royalblue;">Research Interests</span>

Dr. Liu's research focuses on integrating multi-omics data to address fundamental biological questions.
   * Spatial omics data analysis
   * Single-cell  omics data analysis
   * Single-cell Multiomics integration
   * transcriptomics, genomics and epigenomics data
   * Transcriptional and posttranscriptional regulation
   * Enhancer-mediated regulation
   * and More
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---++ <span style="color: royalblue;">Softwares and Databases</span>

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Single cell and spatial transcriptomics data clustering based on adaptive k-nearest neighbor graph</span></b></span></i></span>

<span style="background-color: transparent;">                             aKNNO: </span> https://github.com/liuqivandy/aKNNO

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Spatial pattern and co-localization</span></b></span></i></span>

<span style="background-color: transparent;">                             spaGene: </span> https://github.com/liuqivandy/SpaGene

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Quantify cellular composition diversity across single cell transcriptomics data</span></b></span></i></span>
<span style="background-color: transparent;">      scUniFrac: </span> [[https://github.com/liuqivandy/scUnifrac][<span style="background-color: transparent;">https://github.com/liuqivandy/scUnifrac</span>]]

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Quality control of multiple single cell transcriptomics data</span></b></span></i></span>

<span style="background-color: transparent;">                             scRNABatchQC: </span> https://github.com/liuqivandy/scRNABatchQC

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Multi-resolution cell type annotation for single cell transcriptomics data</span></b></span></i></span>

<span style="background-color: transparent;"> scMRMA:  [[https://github.com/JiaLiVUMC/scMRMA][https://github.com/JiaLiVUMC/scMRMA ]]</span>

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Predict TSS for human intergenic miRNA using GRO/PRO-seq data</span></b></span></i></span>

<span style="background-color: transparent;">                              mirSTP: [[http://bioinfo.vanderbilt.edu/mirSTP/][http://bioinfo.vanderbilt.edu/mirSTP/ ]]</span>

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Analyze Nascent transcriptomics profile from GRO/PRO-Seq data</span></b></span></i></span>
<span style="background-color: transparent;">NRSA: </span> [[http://bioinfo.vanderbilt.edu/NRSA/][<span style="background-color: transparent;">http://bioinfo.vanderbilt.edu/NRSA/</span>]]

   * <i><span class="WYSIWYG_COLOR" style="color: darkcyan;"><b><span style="background-color: transparent;">Human active enhancers database to interpret regulatory variants</span></b></span></i>

                       <span style="background-color: transparent;">HACER: [[http://bioinfo.vanderbilt.edu/AE/HACER/][http://bioinfo.vanderbilt.edu/AE/HACER/ ]]</span>

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span style="background-color: transparent;">Immunotherapy-related genomics portal in Melanoma</span></b></span></i></span>

<span style="background-color: transparent;">Immu-Mela: </span> [[http://bioinfo.vanderbilt.edu/database/Immu-Mela/][<span style="background-color: transparent;">http://bioinfo.vanderbilt.edu/database/Immu-Mela/</span>]]

   * <span class="WYSIWYG_COLOR" style="color: darkcyan;"><i><span><b><span>Immunotherapy-related genomics portal in Pan-cancer studies</span></b></span></i></span>
<span style="background-color: transparent;">                Cancer-Immu: </span> <span style="color: lightskyblue;"> [[http://bioinfo.vanderbilt.edu/database/Cancer-Immu/][<span style="text-decoration-line: underline; background-color: transparent;">http://bioinfo.vanderbilt.edu/database/Cancer-Immu/</span>]]</span>

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---++ <span style="color: royalblue;">Publications</span>

Google Scholar: [[https://scholar.google.com/citations?user=iDa_EYUAAAAJ&hl=en]]

Topic attachments
I	Attachment	Action	Size	Date	Who	Comment
jpg	Qi_Liu.jpg	manage	5430.3 K	13 Jun 2021 - 20:41	QiL

Topic revision: r7 - 10 Oct 2023, QiL

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