Protein Databanks
Family Databanks
Uncategorized Databanks
Below is a list of protein databanks. Some databanks are categorized into protein families, whereas others are not.
Family Databanks
Prosite
References
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Notes:
Doesn't appear to be directly linked to any databanks, but it does contain a few cross-references per profile to Swiss-Prot entries that match
Blocks
References:
Automated assembly of protein blocks for database searching
by Steven Henikoff and Jorja G. Henikoff
Finding sequence motifs in groups of functionally related proteins
by H. O. Smith, T. M. Annau, and S. Chandrasegaran
Download
PRINTS
Related search algorithms:
SPRINT
eMotif search
eMatrix search
References
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Notes:
Linked to Uniprot/Swiss-Prot
Contains cross references per domain for Prosite, Pfam, InterPro, and Blocks
ProDom
References
Download
Pfam
References
The Pfam protein families database
by Alex Bateman, et al.
Download
Prof_Pat
References:
PROF_PAT 1.3: Updated database of patterns used to detect local similarities
by Bachinsky A.G., et al.
Database of patterns PROF_PAT for detecting local similarities
by Nizolenko L.P., et al.
Download
InterPro
References
Download
Uncategorized Databanks
Uniprot
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ProteinDatabanks
Topic revision:
14 Apr 2006,
JeremyStephens
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