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Pengcheng Lu, M.S.

Biostatistician III


Contact Information

Center for Quantitative Sciences and Department of Biostatistics
Vanderbilt University School of Medicine
2220 Pierce Avenue, 490 Preston Research Building
Nashville, Tennessee 37232-6848
Phone Number: 615-936-3175(O)
Email: pengcheng.lu@vanderbilt.edu

Curriculum Vitae

Pengcheng Lu: Updated on June 6, 2014

Education

MS in Statistics 2004
Iowa State University Department of Statistics, Ames, Iowa USA

BS in Biology 1993
Central China Normal University College of Life Sciences, Wuhan, Hubei China

Research Interests

  • Statistical methods for high-dimensional data
  • statistical genetics/genomics
  • statistical learning
  • statistical computing

Peer-Reviewed Publications | Google Scholar Citations

  1. Lovly CM, McDonald NT, Chen H, Ortiz- Cuaran S, Heukamp LC, Yan Y, Florin A, Ozretić L, Lim D, Wang L, Chen Z, Chen X, Lu P, Paik PK, Shen R, Jin H, Buettner R, Ansén S, Perner S, Brockmann M, Bos M, Wolf J, Gardizi M, Wright GM, Solomon B, Russell PA, Rogers T, Suehara Y, Red-Brewer M, Tieu R, Stanchina E, Johnson DH, Horn L, Wong KK, Thomas RK, Ladanyi M, Pao W.. "Analysis of an 'exceptional responder' reveals a critical role for the IGF-1R/IRS-1 signaling axis in lung cancers harboring ALK fusions". (submitted)
  2. Pavlo Gilchuk, Timothy Hill1, Yan Guo, Travis Clark, John Erickson, Pengcheng Lu, Kelli Boyd, John Williams, Yu Shyr and Sebastian Joyce. "Superior protection and distinct phenotype of pulmonary CD8+ T cells elicited by mucosal vaccination (MUC5P.863)". The Journal of Immunology. May 2014.
  3. Kehler, L. A., Fraine, L., Lu, P.. "Evaluation of the Aniseikonia Inspector Version 3 in School-Aged Children". Optometry and Vision Science, May 2014.
  4. Li, Z., Shen, J. H., Kozub, J. A., Prasad, R., Lu, P., Joos, K. M.. "Miniature forward-imaging B-scan optical coherence tomography probe to guide real-time laser ablation". Lasers Surg. Med., March 2014.
  5. Gopal P, Lu P, Ayers GD, Herline AJ, Washington MK. "Tumor deposits in rectal adenocarcinoma after neoadjuvant chemoradiation are associated with poor prognosis". Modern Pathology, Jan 2014
  6. Katsha A, Soutto M, Sehdev V, Peng D, Washington MK, Piazuelo MB, Tantawy MN, Manning HC, Lu P, Shyr Y, Ecsedy J, Belkhiri A, El-Rifai W. "Aurora kinase a promotes inflammation and tumorigenesis in mice and human gastric neoplasia". Gastroenterology, Dec 2013.
  7. Nicole T. Al-Greene, Anna L. Means, Pengcheng Lu, Aixiang Jiang, Carl R. Schmidt, A. Bapsi Chakravarthy, Nipun B. Merchant, M. Kay Washington, Bing Zhang, Yu Shyr, Natasha G. Deane, R. Daniel Beauchamp. "Four Joined Box 1 Promotes Angiogenesis and Is Associated with Poor Patient Survival in Colorectal Carcinoma". PLOS ONE, Jul 2013.
  8. Qiu Q, Lu P, Xiang Y, Shyr Y, Chen X, Lehmann BD, Viox DJ, George AL Jr, Yi Y. "A Data Similarity-Based Strategy for Meta-analysis of Transcriptional Profiles in Cancer". PLOS ONE, Jan 2013.
  9. Engelhardt, B.G., Sengsayadeth, S.M., Jagasia, M., Savani, B.N., Kassim, A.A., Lu, P., Shyr, Y., Yoder, S.M., Rock, M.T., Crowe Jr, J.E.. "Tissue-specific regulatory T cells: biomarker for acute graft-versus-host disease and survival". Exp Hematol, Dec 2012.
  10. Nagathihalli, N.S., Massion, P.P., Gonzalez, A.L., Lu, P., Datta, P.K.. "Smoking Induces Epithelial-to-Mesenchymal Transition in Non-Small Cell Lung Cancer through HDAC-Mediated Downregulation of E-cadherin". Mol Cancer Ther, Nov 2012.
  11. Tolleson C, Fang J, Lu P, Wu H, Davis T. "Tolerability of atypical neuroleptics and acetylcholinesterase inhibitors when treating neuropsychiatric symptoms in Parkinson's disease". Journal of Parkinsonism and Restless Legs Syndrome, Sep 2012.
  12. Hong J, Katsha A, Lu P, Shyr Y, Belkhiri A, El-Rifai W. "Regulation of ERBB2 receptor by t-DARPP mediates trastuzumab resistance in human esophageal adenocarcinoma". Cancer Res., Sep 2012.
  13. Milam A. Brantley, Melissa P. Osborn, Barton J. Sanders, Kasra A. Rezaei, Pengcheng Lu, Chun Li, Ginger L. Milne, Jiyang Cai, Paul Sternberg. "The Short-term Effects of Antioxidant and Zinc Supplements on Oxidative Stress Biomarker Levels in Plasma: A Pilot Investigation". American Journal of Ophthalmology, Jun 2012.
  14. Su Y, Vilgelm AE, Kelley MC, Hawkins O, Liu Y, Boyd KL, Kantrow S, Splittgerber R, Short SP, Sobolik-Delmaire T, Zaja-Milatovic S, Dahlman KB, Amiri KI, Jiang A, Lu P, Shyr Y, Stuart D, Levy SE, Sosman JA, Richmond A. "RAF265 Inhibits the Growth of Advanced Human Melanoma Tumors". Clin Cancer Res., Apr 2012.
  15. Engelhardt BG, Jagasia SM, Crowe JE Jr, Griffith ML, Savani BN, Kassim AA, Lu P, Weitkamp JH, Moore DJ, Yoder SM, Rock MT, Jagasia M. "Predicting post-transplant diabetes mellitus by regulatory T cell phenotype: implications for metabolic intervention to modulate alloreactivity". Blood, Mar 2012.
  16. Milam A. Brantley, Melissa P. Osborn, Barton J. Sanders, Kasra A. Rezaei, Pengcheng Lu, Chun Li, Ginger L. Milne, Jiyang Cai, Paul Sternberg. "Plasma Biomarkers of Oxidative Stress and Genetic Variants in Age-Related Macular Degeneration". American Journal of Ophthalmology, Mar 2012.
  17. Sachin Mehta, Brian K Armstrong, Stephen J Kim, Hassanain Toma, Janice N West, Huiyong Yin, Pengcheng Lu, Laura L Wayman, Franco M Recchia, Paul Sternberg. "Long-term potency, sterility, and stability of vancomycin, ceftazidime, and moxifloxacin for treatment of bacterial endophthalmitis". Retina, Jul-Aug 2011.
  18. Ryan M Tarantola, Anita Agarwal, Pengcheng Lu and Karen M Joos. "Long-term results of combined endoscope-assisted pars plana vitrectomy and glaucoma tube shunt surgery". Retina, Jan 2011.
  19. Jeffrey D. Colburn, MD, David G. Morrison, MD, Robert L. Estes, MD, Chun Li, PhD, Pengcheng Lu, MS, and Sean P. Donahue, MD, PhD. "Longitudinal follow-up of hypermetropic children identified during preschool vision screening". Journal of AAPOS, Jul 2010.
  20. Michael V. Morabito, Randi J. Ulbricht, Richard T. O’Neil, David C. Airey, Pengcheng Lu, Bing Zhang, Lily Wang and Ronald B. Emeson. "High-throughput multiplexed transcript analysis yields enhanced resolution of 5HT2C receptor mRNA editing profiles". Molecular Pharmacology, Jun 2010.
  21. BG Engelhardt, M Jagasia, BN Savani, NL Bratcher, JP Greer, Aixiang Jiang, AA Kassim, P Lu, F Schuening, SM Yoder, JE Crowe Jr.. "Regulatory T cell expression of CLA or a4b7 and skin or gut acute GVHD outcomes". Bone Marrow Transplantation, May 2010.
  22. J. Joshua Smith, Natasha G. Deane, Fei Wu, Nipun B. Merchant, Bing Zhang, Aixiang Jiang, Pengcheng Lu, J. Chad Johnson, Carl Schmidt, Steven Eschrich, Christian Kis, Shawn Levy, Kay Washington, Martin Heslin, Robert J. Coffey, Timothy J. Yeatman, Yu Shyr and R. Daniel Beauchamp. "Experimentally-derived Metastasis Gene Expression Profile Predicts Recurrence-Related Death in Human Colorectal Carcinoma". Gastroenterology, Mar 2010.
  23. Wylie CJ, Hendricks TJ, Zhang B, Wang L, Lu P, Leahy P, Fox S, Maeno H, Deneris ES. "Distinct transcriptomes define rostral and caudal serotonin neurons". Journal of Neuroscience, Jan 2010.
  24. Ke-Feng Lei, Yan-Fang Wang, Xiao-Qun Zhu, Peng-Cheng Lu, Bing-Sheng Sun, Hu-Liang Jia, Ning Ren, Qing-Huai Ye, Hui-Chuan Sun, Lu Wang, Zhao-You Tang, Lun-Xiu Qin. "Identification of MSRA gene on chromosome 8p as a candidate metastasis suppressor for human hepatitis B virus-positive hepatocellular carcinoma". BMC Cancer, Sep 2007.

Practical Use of R

My sample R code for preprocessing microarray data and reporting analysis result: Batch Preprocess Two-color cDNA Microarray Data, Report Up and Down-regulated genes at .html format

Topic revision: r27 - 24 Jun 2014, PengchengLu
 

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