Tao R, Mercaldo ND, Haneuse S, Maronge JM, Rathouz PJ, Heagerty PJ, Schildcrout JS. Two-wave two-phase outcome-dependent sampling designs, with applications to longitudinal binary data. Stat Med. 2021 Apr 15;40(8):1863-1876. doi: 10.1002/sim.8876. Epub 2021 Jan 13. PMID: 33442883; PMCID: PMC8110123. Here
Schildcrout JS, Schisterman EF, Aldrich MC, Rathouz PJ. Outcome-related,Auxiliary Variable Sampling Designs for Longitudinal Binary Data. Epidemiology. 2018 Jan;29(1):58-66. doi: 10.1097/EDE.0000000000000765. PubMed PMID: 29068841; PubMed Central PMCID: PMC5718926. Here
Di Gravio C, Tao R, Schildcrout JS. Design and analysis of two-phase studies with multivariate longitudinal data. Biometrics. 2022 Jan 11. doi: 10.1111/biom.13616. Epub ahead of print. PMID: 35014029. Here
Schildcrout JS, Haneuse S, Tao R, Zelnick LR, Schisterman EF, Garbett SP, Mercaldo ND, Rathouz PJ, Heagerty PJ. Two-Phase, Generalized Case-Control Designs for the Study of Quantitative Longitudinal Outcomes. Am J Epidemiol. 2020 Feb 28;189(2):81-90. doi: 10.1093/aje/kwz127. PMID: 31165875; PMCID: PMC7298772. Here
Zelnick LR, Schildcrout JS, Heagerty PJ. Likelihood-based analysis of outcome-dependent sampling designs with longitudinal data. Stat Med. 2018 Jun 15;37(13):2120-2133. doi: 10.1002/sim.7633. Epub 2018 Mar 15. PubMED PMID: 29542170. Here
Schildcrout JS, Rathouz PJ, Zelnick LR, Garbett SP, Heagerty PJ. BIASED SAMPLING DESIGNS TO IMPROVE RESEARCH EFFICIENCY: FACTORS INFLUENCING PULMONARY FUNCTION OVER TIME IN CHILDREN WITH ASTHMA. Ann Appl Stat. 2015 Jun;9(2):731-753. PubMed PMID: 26322147; PubMed Central PMCID: PMC4551501. Here
Schildcrout JS, Garbett SP, Heagerty PJ. Outcome vector dependent sampling with longitudinal continuous response data: stratified sampling based on summary statistics. Biometrics. 2013 Jun;69(2):405-16. doi: 10.1111/biom.12013. Epub 2013 Feb 14. PubMed PMID: 23409789; PubMed Central PMCID: PMC3880022. Here
Sauer S, Hedt-Gauthier B, Haneuse S. Optimal allocation in stratified cluster-based outcome-dependent sampling designs. Stat Med. 2021 Aug 15;40(18):4090-4107. doi: 10.1002/sim.9016. Epub 2021 Jun 2. PMID: 34076912. Here
Sauer S, Hedt-Gauthier B, Rivera-Rodriguez C, Haneuse S. Small-sample inference for cluster-based outcome-dependent sampling schemes in resource-limited settings: Investigating low birthweight in Rwanda. Biometrics. 2021 Jan 14:10.1111/biom.13423. doi: 10.1111/biom.13423. Epub ahead of print. PMID: 33444459; PMCID: PMC8277876. Here
Rivera-Rodriguez C, Spiegelman D, Haneuse S. On the analysis of two-phase designs in cluster-correlated data settings. Stat Med. 2019 Oct 15;38(23):4611-4624. doi: 10.1002/sim.8321. Epub 2019 Jul 29. PMID: 31359448; PMCID: PMC6736737. Here
Rivera-Rodriguez C, Haneuse S, Wang M, Spiegelman D. Augmented pseudo- likelihood estimation for two-phase studies. Stat Methods Med Res. 2020 Feb;29(2):344-358. doi: 10.1177/0962280219833415. Epub 2019 Mar 5. PMID: 30834815; PMCID: PMC7659466. Here
Haneuse S, Rivera-Rodriguez C. On the Analysis of Case-Control Studies in Cluster-correlated Data Settings. Epidemiology. 2018 Jan;29(1):50-57. doi: 10.1097/EDE.0000000000000763. PubMed PMID: 29068840; PubMed Central PMCID: PMC5718962 Here
Tao R, Lotspeich SC, Amorim G, Shaw PA, Shepherd BE. Efficient semiparametric inference for two-phase studies with outcome and covariate measurement errors. Stat Med. 2021 Feb 10;40(3):725-738. doi: 10.1002/sim.8799. Epub 2020 Nov 3. PMID: 33145800; PMCID: PMC8214478. Here
Lotspeich SC, Shepherd BE, Amorim GGC, Shaw PA, Tao R. Efficient odds ratio estimation under two-phase sampling using error-prone data from a multi-national HIV research cohort. Biometrics. 2021 Jul 2. doi: 10.1111/biom.13512. Epub ahead of print. PMID: 34213008. Here
Mitani AA, Mercaldo ND, Haneuse S, Schildcrout JS. Survey design and analysis considerations when utilizing misclassified sampling strata. BMC Med Res Methodol. 2021 Jul 11;21(1):145. doi: 10.1186/s12874-021-01332-8. PMID: 34247586; PMCID: PMC8273975.
Mercaldo ND, Brothers KB, Carrell DS, Clayton EW, Connolly JJ, Holm IA, Horowitz CR, Jarvik GP, Kitchner TE, Li R, McCarty CA, McCormick JB, McManus VD, Myers MF, Pankratz JJ, Shrubsole MJ, Smith ME, Stallings SC, Williams JL, Schildcrout JS. Enrichment sampling for a multi-site patient survey using electronic health records and census data. J Am Med Inform Assoc. 2018 Dec 27. doi: 10.1093/jamia/ocy164. [Epub ahead of print] PubMed PMID: 30590688. Here
Shi Y, Graves JA, Garbett SP, Zhou Z, Marathi R, Wang X, Harrell FE, Lasko TA, Denny JC, Roden DM, Peterson JF, Schildcrout JS. A Decision-Theoretic Approach to Panel-Based, Preemptive Genotyping. MDM Policy Pract. 2019 Aug 17;4(2):2381468319864337. doi: 10.1177/2381468319864337. PMID: 31453360; PMCID: PMC6699004. Here
Schildcrout JS, Shi Y, Danciu I, Bowton E, Field JR, Pulley JM, Basford MA, Gregg W, Cowan JD, Harrell FE Jr, Roden DM, Peterson JF, Denny JC. A prognostic model based on readily available clinical data enriched a pre-emptive pharmacogenetic testing program. J Clin Epidemiol. 2016 Apr;72:107-15. doi: 10.1016/j.jclinepi.2015.08.028. Epub 2015 Nov 25. PubMed PMID: 26628336; PubMed Central PMCID: PMC4779720. Here
Tao R, Zeng D, Lin DY. Optimal Designs of Two-Phase Studies. J Am Stat Assoc. 2020;115(532):1946-1959. doi: 10.1080/01621459.2019.1671200. Epub 2019 Oct 29. PMID: 33716361; PMCID: PMC7954143.
Maronge JM, Tao R, Schildcrout JS, Rathouz PJ. Generalized case-control sampling under generalized linear models. Biometrics. 2021 Sep 29. doi: 10.1111/biom.13571. Epub ahead of print. PMID: 34586638.
Wurm MJ, Rathouz PJ. Semiparametric Generalized Linear Models with the gldrm Package. R J. 2018 Jul;10(1):288-307. PMID: 30873295; PMCID: PMC6414059.
Huang A, Rathouz PJ. Orthogonality of the Mean and Error Distribution in Generalized Linear Models. Commun Stat Theory Methods. 2017;46(7):3290-3296. doi: 10.1080/03610926.2013.851241. Epub 2016 Nov 17. PMID: 28435181; PMCID: PMC5396964.
Huang A, Rathouz PJ. Proportional likelihood ratio models for mean regression. Biometrika. 2012 Mar;99(1):223-229. doi: 10.1093/biomet/asr075. PMID: 24421412; PMCID: PMC3888642.
Schildcrout JS, Harrell FE Jr, Heagerty PJ, Haneuse S, Di Gravio C, Garbett SP, Rathouz PJ, Shepherd BE. Model-assisted analyses of longitudinal, ordinal outcomes with absorbing states. Stat Med. 2022 Jun 30;41(14):2497-2512. doi: 10.1002/sim.9366. Epub 2022 Mar 7. PMID: 35253265; PMCID: PMC9232888.
!McDaniel, Lee S., Nicholas C. Henderson, and Paul J. Rathouz. "Fast Pure R Implementation of GEE: Application of the Matrix Package." R JOURNAL 5.1 (2013): 181-187. Here
I | Attachment | Action | Size | Date | Who | Comment |
---|---|---|---|---|---|---|
RData | FullCohort.RData | manage | 87.4 K | 16 Aug 2017 - 17:30 | JonathanSchildcrout | Full cohort data that is used by ODSCode.R to run analyses |
R | ODSCode.R | manage | 3.7 K | 16 Aug 2017 - 17:24 | JonathanSchildcrout | Example to conduct an ODS analysis using a simulated dataset. This code runs the full cohort model with maximum likeliheood and the ODS sample using ACML, WL, MI |
R | ODSCodeFunctions.R | manage | 15.7 K | 16 Aug 2017 - 17:28 | JonathanSchildcrout | Functions called by ODSCode.R to run analyses |