The following code was used for the manuscript "Sensitivity analyses comparing time-to-event outcomes only existing in a subset selected postrandomization and relaxing monotonicity" by Shepherd BE, Gilbert PB, and Dupont CT.

• sensitivitySGD.R: The function which computes our estimate.
• master_runner.R: Sets up simulations (primary and event-driven).
• slave_runner.R: Generates data for simulations and performs analysis on simulated data.

• sensitivitySGD_followup.R: Computes our estimate accounting for pre-selection follow-up.
• followup_master_runner.R: Sets up simulations accounting for pre-selection follow-up.
• followup_slave_runner.R: Generates data for simulations with pre-selection follow-up and performs analysis.

• VaxgenAnalysisCode.R: Performs the VaxGen analyses.
• VaxgenFiguresCode.R: Creates figures used in VaxGen analyses.
• vaxgen_graph.R: Makes sensitivity analysis figures used in the animation.
• assemble_anim.rb: Ruby file which creates the animation AnimatedVaxGen.