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---+ Chun Li, Ph.D.
---++ Associate Professor, [[%SCRIPTURL%/view][Department of Biostatistics]]
---++ Investigator, [[http://chgr.mc.vanderbilt.edu/][Center for Human Genetics Research]]
<br />
---+++++ E-mail: chun.li@vanderbilt.edu
---+++++ Phone: (615) 322-2884
---+++++ Address: 2525 West End, Ste. 11000 Nashville, TN 37203
---+++++ [[%ATTACHURL%/ChunLi_CV.pdf][Curriculum Vitae]]
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<!---++!! [[ChunPostDoc][Post-doctoral Position]] -->

---+++ Software
   * [[SampleSeq][SampleSeq and SampleSeq2]]: Optimal subject selection in targeted and whole genome sequencing experiments
   * [[SMUG][SMUG]]: Somatic Mutation Gleaner for detecting tumor somatic mutations
   * [[ASAP][ASAP]]: A program for automated sequence data processing on computer clusters
   * [[GWAsimulator][GWAsimulator]]: A rapid whole genome simulation program
   * [[ATOM][ATOM]]: Association Test via Optimally-weighted Markers, a gene-based association test
   * [[GIST][GIST]]: Genotype-IBD Sharing Test, a test of association between association and linkage signals
   * [[HWECC][HWECC]]: Hardy-Weinberg test for case-control data
   * [[HWETRIO][HWETRIO]]: Hardy-Weinberg test for trio data
   * [[TDT2locus][TDT2locus]]: Two-locus TDT analysis
   * [[OrdinalRegression][OrdinalRegression]]: An R program for testing for association between two ordinal variables while adjusting for covariates
   * [[OrdinalData][OrdinalData]]: An R package for analysis with ordinal predictors or ordinal outcomes

---+++ Research interest: 
   * Statistical genetics (current areas) 
      * next-generation sequencing (NGS) data analysis method development
      * detection of somatic mutations in tumors using NGS data
      * detection of somatic changes in normal tissues using NGS data
      * designs of sequencing studies (e.g., subject selection, pooling)
   * genetic epidemiology
   * statistical theory, statistical computing
   * statistics education
   * diabetes and its complications

---++!! Teaching
IGP 304: Statistics for Biomedical Research ([[IntroBiostatCourse2006][Spring 2006]], [[IntroBiostatCourse2007][Spring 2007]])

---+++ Data for publications
   * [[CSS4PL][CSS4PL]]: Simulation programs and results for the 4PL approach to CSS lines
   * [[SNPChipCoverage][SNP chip coverage variation]]: Coverage maps of SNP chips and their coverage variation across the human genome and over known genes
   * [[SNPChipCostEfficiency][SNP chip cost efficiency]]: Comparison of cost efficiency of SNP chips

---+++ Collaborations
   * *Cancer genetics* 
      1 Shanghai Breast Cancer Study (Drs. Wei Zheng, Qiuyin Cai, Xiao-Ou Shu, Jirong Long)
      1 Prostate cancer (Dr. Jay Fowke)
   * *Clinical pharmacology* (Drs. Mike Stein, Daniel Kurnik)
   * *Pediatrics* (Dr. Rizwan Hamid)
   * *[[http://www.vanderbilteyeinstitute.com/][Ophthalmology]]*: I am a general biostatistician for the Department of Ophthalmology and the Vanderbilt Eye Institute. The projects are dynamic, some long and some short, some large and some small. ([[OphthalReport][status report]])
   * *[[http://kc.vanderbilt.edu/][Kennedy Center]]*: I provide statistical genetics support to the investigators of the Vanderbilt Kennedy Center. ([[KCReportChunLi][status report]])

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Topic revision: r93 - 30 Dec 2013, NanaKwarteng

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