<table border="0"> <tbody> <tr> <td><img alt="ChunLi.jpg" src="%ATTACHURL%/ChunLi.jpg" height="320" /></td> <td width="5%"></td> <td> ---+ Chun Li, Ph.D. ---++ Associate Professor, [[%SCRIPTURL%/view][Department of Biostatistics]] ---++ Investigator, [[http://chgr.mc.vanderbilt.edu/][Center for Human Genetics Research]] <br /> ---+++++ E-mail: chun.li@vanderbilt.edu ---+++++ Phone: (615) 322-2884 ---+++++ Address: 2525 West End, Ste. 11000 Nashville, TN 37203 ---+++++ [[%ATTACHURL%/ChunLi_CV.pdf][Curriculum Vitae]] </td> </tr> </tbody> </table> <!---++!! [[ChunPostDoc][Post-doctoral Position]] --> ---+++ Software * [[SampleSeq][SampleSeq and SampleSeq2]]: Optimal subject selection in targeted and whole genome sequencing experiments * [[SMUG][SMUG]]: Somatic Mutation Gleaner for detecting tumor somatic mutations * [[ASAP][ASAP]]: A program for automated sequence data processing on computer clusters * [[GWAsimulator][GWAsimulator]]: A rapid whole genome simulation program * [[ATOM][ATOM]]: Association Test via Optimally-weighted Markers, a gene-based association test * [[GIST][GIST]]: Genotype-IBD Sharing Test, a test of association between association and linkage signals * [[HWECC][HWECC]]: Hardy-Weinberg test for case-control data * [[HWETRIO][HWETRIO]]: Hardy-Weinberg test for trio data * [[TDT2locus][TDT2locus]]: Two-locus TDT analysis * [[OrdinalRegression][OrdinalRegression]]: An R program for testing for association between two ordinal variables while adjusting for covariates * [[OrdinalData][OrdinalData]]: An R package for analysis with ordinal predictors or ordinal outcomes ---+++ Research interest: * Statistical genetics (current areas) * next-generation sequencing (NGS) data analysis method development * detection of somatic mutations in tumors using NGS data * detection of somatic changes in normal tissues using NGS data * designs of sequencing studies (e.g., subject selection, pooling) * genetic epidemiology * statistical theory, statistical computing * statistics education * diabetes and its complications ---++!! Teaching IGP 304: Statistics for Biomedical Research ([[IntroBiostatCourse2006][Spring 2006]], [[IntroBiostatCourse2007][Spring 2007]]) ---+++ Data for publications * [[CSS4PL][CSS4PL]]: Simulation programs and results for the 4PL approach to CSS lines * [[SNPChipCoverage][SNP chip coverage variation]]: Coverage maps of SNP chips and their coverage variation across the human genome and over known genes * [[SNPChipCostEfficiency][SNP chip cost efficiency]]: Comparison of cost efficiency of SNP chips ---+++ Collaborations * *Cancer genetics* 1 Shanghai Breast Cancer Study (Drs. Wei Zheng, Qiuyin Cai, Xiao-Ou Shu, Jirong Long) 1 Prostate cancer (Dr. Jay Fowke) * *Clinical pharmacology* (Drs. Mike Stein, Daniel Kurnik) * *Pediatrics* (Dr. Rizwan Hamid) * *[[http://www.vanderbilteyeinstitute.com/][Ophthalmology]]*: I am a general biostatistician for the Department of Ophthalmology and the Vanderbilt Eye Institute. The projects are dynamic, some long and some short, some large and some small. ([[OphthalReport][status report]]) * *[[http://kc.vanderbilt.edu/][Kennedy Center]]*: I provide statistical genetics support to the investigators of the Vanderbilt Kennedy Center. ([[KCReportChunLi][status report]]) <!-- * Personal Preferences (details in %TWIKIWEB%.TWikiVariables) * Horizontal size of text edit box: * Set EDITBOXWIDTH = 40 * Vertical size of text edit box: * Set EDITBOXHEIGHT = 50 * Optionally write protect your home page: (set it to your %TWIKIWEB%.WikiName) * Set JUMPAUTOCOMPLETE = yes * Set RELEASEEDITLOCKCHECKBOX = checked="checked" * Default to using raw text editor: (for a specific page, use Set NOWYSIWYG = 1) * Set TINYMCEPLUGIN_DISABLE = 1 -->
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