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---+ Attachments Notes: * [[%ATTACHURL%/02-03_Notes_on_Rosner_Ch_1_and_2.pdf][Notes on Rosner Ch 1 and 2]] * [[%ATTACHURL%/020_Bayes_and_ROC_lecture.pdf][Bayes and ROC lecture]] * [[%ATTACHURL%/10-08_Law_of_large_numbers_lecture.pdf][Law of large numbers lecture]] * [[%ATTACHURL%/10-08_What_if_there_were_no_LLN_lecture.pdf][What if there were no LLN lecture]] * [[%ATTACHURL%/2013-10-14_Likelihood_Examples.R][Likelihood_Examples.R]] * [[%ATTACHURL%/2013-10-15_Likelihood_Inference.pdf][Likelihood Inference lecture]] * [[%ATTACHURL%/2013-10-15_Blume.2002.LikelihoodInference.pdf][Blume (2002) on Likelihood Inference]] * [[%ATTACHURL%/10-22_Bayesian_example.pdf][Bayesian inference example]] * [[%ATTACHURL%/11-06_Nonparametric_tests.pdf][Nonparametric tests]] * [[%ATTACHURL%/11-14_chisquare_test_for_categorical_data_part1.pdf][chisquare_test_for_categorical_data_part1]] * [[%ATTACHURL%/11-14_Study_Design_Impact_on_RD_RR_OR.xlsx][Study_Design_Impact_on_RD_RR_OR]] * [[%ATTACHURL%/11-19_mantel-haenszel_test_for_common_odds_ratios.pdf][mantel-haenszel_test_for_common_odds_ratios]] * [[%ATTACHURL%/11-21_Mcnemars_and_ANOVA.pdf][Mcnemars_and_ANOVA]] Quizzes: * [[%ATTACHURL%/Quiz_01_WithSolutions.pdf][Quiz_01_WithSolutions.pdf]] * [[%ATTACHURL%/Quiz_02_WithSolutions.pdf][Quiz_02_WithSolutions.pdf]] * [[%ATTACHURL%/Quiz_03_WithSolutions.pdf][Quiz_03_WithSolutions.pdf]] * [[%ATTACHURL%/Quiz_04_WithoutSolutions.pdf][Quiz_04_WithoutSolutions.pdf]] * [[%ATTACHURL%/Quiz_04_WithoutSolutions.doc][Quiz_04_WithoutSolutions.doc]] * [[%ATTACHURL%/Quiz_04_WithSolutions.pdf][Quiz_04_WithSolutions.pdf]] * [[%ATTACHURL%/Quiz_05_WithoutSolutions.pdf][Quiz_05_WithoutSolutions.pdf]] * [[%ATTACHURL%/Quiz_06_WithoutSolutions.pdf][Quiz_06_WithoutSolutions.pdf]] * [[%ATTACHURL%/Quiz_07_WithoutSolutions.pdf][Quiz_07_WithoutSolutions.pdf]] Midterm exams: * [[%ATTACHURL%/MidtermExam-2009-WithoutSolutions.pdf][MidtermExam-2009-WithoutSolutions.pdf]] * [[%ATTACHURL%/MidtermExam-2009-WithSolutions.pdf][MidtermExam-2009-WithSolutions.pdf]] * [[%ATTACHURL%/MidtermExam-2010-WithoutSolutions.pdf][MidtermExam-2010-WithoutSolutions.pdf]] * 2010 does not have a solution set. * [[%ATTACHURL%/MidtermExam-2011-WithoutSolutions.pdf][MidtermExam-2011-WithoutSolutions.pdf]] * [[%ATTACHURL%/MidtermExam-2011-WithSolutions.pdf][MidtermExam-2011-WithSolutions.pdf]] * [[%ATTACHURL%/MidtermExam-2012-v02-WithoutSolutions.pdf][MidtermExam-2012-v02-WithoutSolutions.pdf]] * [[%ATTACHURL%/MidtermExam-2012-v02-WithSolutions.pdf][MidtermExam-2012-v02-WithSolutions.pdf]] * [[%ATTACHURL%/MidtermExam-2013-WithoutSolutions.pdf][MidtermExam-2013-WithoutSolutions.pdf]] Final exams: * [[%ATTACHURL%/FinalExam-2009-WithoutSolutions.pdf][FinalExam-2009-WithoutSolutions.pdf]] * [[%ATTACHURL%/FinalExam-2009-WithSolutions.pdf][FinalExam-2009-WithSolutions.pdf]] * [[%ATTACHURL%/FinalExam-2010-WithoutSolutions.pdf][FinalExam-2010-WithoutSolutions.pdf]] * [[%ATTACHURL%/FinalExam-2010-WithSolutions-PartialSolutionsOnly.pdf][FinalExam-2010-WithSolutions-PartialSolutionsOnly.pdf]] * [[%ATTACHURL%/FinalExam-2011-WithoutSolutions.pdf][FinalExam-2011-WithoutSolutions.pdf]] * [[%ATTACHURL%/FinalExam-2011-WithSolutions.pdf][FinalExam-2011-WithSolutions.pdf]] * [[%ATTACHURL%/FinalExam-2012-Part2-WithoutSolutions.pdf][FinalExam-2012-Part2-WithoutSolutions.pdf]] * [[%ATTACHURL%/FinalExam-2012-Part1-WithSolutions.pdf][FinalExam-2012-Part1-WithSolutions.pdf]] * [[%ATTACHURL%/FinalExam-2012-Part2-WithSolutions.pdf][FinalExam-2012-Part2-WithSolutions.pdf]] Optional Fun: * [[http://onpoint.wbur.org/2013/09/06/pregnancy-rules Pregnancy rules]] - a real evidence based debate and wrestling with small probabilities of very serious events. * [[http://online.wsj.com/article/SB10001424052702304626104579123383535635644.html How often do gamblers really win?]] * [[http://www.theatlantic.com/technology/archive/2013/10/a-wondrous-gif-shows-the-most-popular-baby-names-for-girls-since-1960/280709/ A Wondrous GIF Shows the Most Popular Baby Names for Girls Since 1960]] * [[http://www.stat.columbia.edu/~tzheng/files/Rcolor.pdf Colors by name in R]] ---+ Bios 311 Syllabus The syllabus will be dynamically updated depending on the class' needs and ability. | *Week* | *Date* | *Special dates* | *Especially important topics* | *Reading to have finished* | *Assignments due* | | 1 | Monday, August 19, 2013 | | | | | | | Tuesday, August 20, 2013 | | | | | | | Thursday, August 22, 2013 | First class | | | Pass The Pigs strategy workshop due at the end of class. | | 2 | Monday, August 26, 2013 | | Arithmetic mean, quantiles/percentiles, mode. Variance, standard deviation, IQR, range. Bar graph, histogram, stem and leaf plot, box plot, dot plot. | Rosner Ch 1-2, Overview and Descriptive Statistics | | | | Tuesday, August 27, 2013 | | | | | | | Thursday, August 29, 2013 | | | | | | 3 | Monday, September 02, 2013 | Labor day, no lab | Probability rules, independence, mutually exclusive events, Venn diagrams, set notation. Bayes rule. Sensitivity, specificity, PPV, NPV, ROC curves. | Rosner Ch 3, Probability | | | | Tuesday, September 03, 2013 | | | | Quiz 01 | | | Thursday, September 05, 2013 | | | | | | 4 | Monday, September 09, 2013 | | RVs. Parameters and statistics. Standard notation. E[X], V[X], SD[X]. Linear transformations. Sums of RVs. Bernouli, Binomial, Poisson, Normal, t, Chi-sq. | Rosner Ch 4-5, Discrete and Continuous Probability Distributions | | | | Tuesday, September 10, 2013 | | | | | | | Thursday, September 12, 2013 | | | | Quiz 02 | | 5 | Monday, September 16, 2013 | | Representative samples, random selection. Confidence intervals for binomial data, poisson data, mean and sd for normal data &/or large samples. Exact and approximate confidence intervals. Multiple methods exist for the same parameter and type of data, e.g. binomial. | Rosner Ch 6, Estimation | | | | Tuesday, September 17, 2013 | | | | | | | Thursday, September 19, 2013 | | | | Quiz 03 | | 6 | Monday, September 23, 2013 | | Hypothesis testing for a mean from Normal data. One-sided vs two-sided alternatives. The proof by contradiction reasoning. Two types of errors (Type 1 alpha and Type 2 beta). Power and determining sample size. The (sometimes imperfect) association between hypothesis tests and CIs. Tests for variance from Normal data, theta for Binomial data, and lambda for Poisson data. | Rosner Ch 7, One-sample Inference and Hypothesis Testing | | | | Tuesday, September 24, 2013 | | | | | | | Thursday, September 26, 2013 | | | | Practice midterm | | 7 | Monday, September 30, 2013 | | | Midterm Week | Practice midterm due | | | Tuesday, October 01, 2013 | | | | Midterm Part 1 taken in class. | | | Thursday, October 03, 2013 | | | | Midterm Part 2 due by 10am. Class reserved for Part 3, which is due by midnight on Friday. | | 8 | Monday, October 07, 2013 | | Revisting the fundamental ideas of estimation, the structure of hypothesis testing, Type I (alpha) and Type II (beta) errors, the decision framework of hypothesis testing | Rosner Ch 7, One-sample Inference and Hypothesis Testing | | | | Tuesday, October 08, 2013 | | | Law of large numbers lecture, What if there were no LLN lecture | | | | Thursday, October 10, 2013 | Fall break, no class | | | | | 9 | Monday, October 14, 2013 | | Maximum likelihood estimation | Rosner Ch 6 MLE section | | | | Tuesday, October 15, 2013 | In 419 abc instead of bcd | Likelihood Inference | Likelihood Inference lecture | | | | Thursday, October 17, 2013 | | | Blume 2002 article | Quiz 04 | | 10 | Monday, October 21, 2013 | | Bayesian Inference | Bayesian inference sections in Rosner | | | | Tuesday, October 22, 2013 | | Bayesian inference lecture | Bayesian inference lecture notes | | | | Thursday, October 24, 2013 | | Project brainstorming | | | | 11 | Monday, October 28, 2013 | | | Rosner Ch 8, Two-sample Inference and Hypothesis Testing | | | | Tuesday, October 29, 2013 | | | | | | | Thursday, October 31, 2013 | | | | Project proposal due by midnight (submit earlier for feedback) | | 12 | Monday, November 04, 2013 | | | Rosner Ch 9, Nonparametric Methods | | | | Tuesday, November 05, 2013 | | | | Quiz 05 | | | Thursday, November 07, 2013 | | | | | | 13 | Monday, November 11, 2013 | | | Rosner Ch 10, Categorical Data | | | | Tuesday, November 12, 2013 | | | | | | | Thursday, November 14, 2013 | | | | Quiz 06 | | 14 | Monday, November 18, 2013 | | | Rosner Ch 13.1-13.6, Advanced categorical data methods; Ch 12.1-12.5, One-way ANOVA | | | | Tuesday, November 19, 2013 | | | | | | | Thursday, November 21, 2013 | | | | | | 15 | Monday, November 25, 2013 | Thanksgiving, no class | | | | | | Tuesday, November 26, 2013 | Thanksgiving, no class | | | | | | Thursday, November 28, 2013 | Thanksgiving, no class | | | | | 16 | Monday, December 02, 2013 | | | Final week | Quiz 07 | | | Tuesday, December 03, 2013 | | | | Final Part 1 taken in class. | | | Thursday, December 05, 2013 | Last class | | | Final Part 1 taken in class. | | 17 | Monday, December 09, 2013 | Finals week | | | | | | Tuesday, December 10, 2013 | Finals week | | | Projects part 2 due by 10am. Final Part 2 due by 10am. Class reserved for Part 3, which is due by midnight today (Tuesday). | | | Wednesday, December 11, 2013 | Finals week | | | | | | Thursday, December 12, 2013 | Finals week | | | | | | Friday, December 13, 2013 | Finals week | | | | ----- <!-- Settings: * Set ALLOWTOPICVIEW = * Set ALLOWTOPICCHANGE = RobertGreevy When I restrict the viewing use: RobertGreevy, BiostatFacultyGroup and create Bios311Group -->
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Topic revision: r33 - 25 Aug 2015,
RobertGreevy
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