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---+++ <nop>ATOM: <u>A</u>ssociation <u>T</u>est via <u>O</u>ptimally-weighted <u>M</u>arkers URL of this page: [[http://biostat.mc.vanderbilt.edu/ATOM][http://biostat.mc.vanderbilt.edu/ATOM]] This [[%ATTACHURL%/ATOM.tgz][program]] is written in R ([[http://www.r-project.org][www.r-project.org]]). The package has four files. The analysis functions are in =ATOM.r=. The other three files provide example data and code for running !ATOM. To run !ATOM, you need to prepare a reference data set for the region of interest. The example data set was extracted from the <nop>HapMap. Please see the file =ATOM.r= for detailed explanations of the arguments of =ATOM()=. The paper that describes the method is: Li M, Wang K, Grant SF, Hakonarson H, Li C (2009) <nop>ATOM: A powerful gene-based association test by combining optimally weighted markers. Bioinformatics 25:497-503 (PMID: 19074959) ([[http://bioinformatics.oxfordjournals.org/cgi/reprint/25/4/497][paper]]) <!-- * Set ALLOWTOPICCHANGE = ChunLi * Set FOSWIKI_LAYOUT_URL = /wiki/pub/Main/ChunLi/ChunLiLayout.css * Set FOSWIKI_STYLE_URL = /wiki/pub/Main/ChunLi/ChunLiStyle.css -->
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Topic revision: r4 - 05 Jun 2009,
ChunLi
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