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AmericanIdiomsSlang16Apr2007
a day late and a dollar short adjective Definition: (idiomatic) action that was taken too late and too feeble to be of any use, not enough to be useful ...
r2 - 01 Oct 2007 - 10:11 by WillGray
AmericanIdiomsSlang16Mar2007
get the hell out of dodge Meaning: (idiomatic) to leave or get out (of anywhere) at once Origin: The phrase is a reference to Dodge City, Kansas. Dodge City ...
r2 - 01 Oct 2007 - 10:11 by WillGray
AmericanIdiomsSlang1Aug2007
a different ballpark noun Definition: (idiomatic) something totally unrelated or of a vastly different scale or scope. Example: Playing Flight Sim ...
r2 - 01 Oct 2007 - 10:12 by WillGray
AmericanIdiomsSlang1Mar2007
1. a cut above adjective Definition: (idiomatic) superior to; of a higher quality than Examples: She really thinks she's a cut above in that hat. ...
r3 - 01 Oct 2007 - 10:09 by WillGray
AmericanIdiomsSlang1Sep2007
a dime a dozen adjective Definition: (idiomatic) so common as to be practically worthless. Example: Elvis impersonators are a dime a dozen Billy's ...
r2 - 01 Oct 2007 - 10:13 by WillGray
April62009AllDeptMtg
Good News Meeting Ground Rules PEOPLE * Aihua "Anna" Bian, Biostatistician I * Steven Chen, Assistant Professor * Mike Guo, Bioinformatics Systems Engineer ...
r45 - 26 Apr 2013 - 11:16 by JohnBock
BasicSci
Basic Science Chairs * IT Infrastructure for Basic Sciences Main.FrankHarrell 04 Feb 2004
r3 - 06 Mar 2008 - 12:11 by WillGray
BeamerTips
Beamer Tips and Tricks Using * DocProcess has a few links to Beamer examples * Beamer Template is an example from Frank Harrell Handouts Frank's example ...
NEW - 21 Aug 2007 - 14:34 by WillGray
BiostatItGroup
Edit this topic to add a description to the BiostatItGroup
r5 - 10 Feb 2020 - 17:13 by DalePlummer
BiostatUsersGroup
Biostat Users Group * Set GROUP = ChangYu, ColeBeck, DalePlummer, DanielByrne, FrankHarrell, HeidiChen, SvetlanaEden, TatsukiKoyama, TebebGebretsadik, WilliamDupont ...
r180 - 23 Mar 2022 - 12:15 by DalePlummer
BonnieLaFleur
* Name: Bonnie LaFleur * Email: * Phone Number: * Comment: Research Interests * Statistical analysis * Permutation tests * Linear and nonlinear ...
r19 - 15 Nov 2007 - 14:38 by WillGray
CalendarComments
Calendar Comments Does the department's web calendar (http://biostat.mc.vanderbilt.edu/calendar) meet your needs? Do you use it? How could it be improved? If you ...
r7 - 19 May 2006 - 10:24 by DalePlummer
CancerBiostatWorkshop
2012 Center for Quantitative Sciences Workshop * Date: Third Friday of every month ( July, August, December) * Time: noon 1 pm (Lunch will be provided) ...
r30 - 26 Apr 2013 - 11:16 by JohnBock
ColeAndWillFantasySportsApplication
Cole and Will Fantasy Sports Application Description An application that will facilitate fantasy sports drafts. Our first priority is football. It needs to import ...
r4 - 03 May 2005 - 13:08 by WillGray
ColeBeck
* Name: Cole Beck * Email: cole.beck #64;vumc.org * Phone: 3 6007 * Location: 2525 * Comment: You should call me if you need access to the Biostatistic ...
r118 - 14 Jun 2018 - 11:57 by ColeBeck
ColesPreferencesForm
*Name* Type Size Value Tooltip message PROJECTA text 15 Person taking on project A PROJECTB text 15 Person taking on project B LEADER text 15 Leader ...
r3 - 10 May 2005 - 11:07 by WillGray
ComputingClinic
Computing Clinic The Computing Clinic is currently on an extended hiatus (as of 12/2013) while the department's administration structure is being reorganized. We ...
r79 - 09 Apr 2014 - 15:21 by DalePlummer
ContinuingEducation
Biostatistics Seminars Attended I didn't record this unitl 12 Mar 2012 when informed to keep the attendance records. 1 14 Mar 2012: Theory and application of statistical ...
r27 - 13 Nov 2014 - 15:28 by WillGray
DataType
Project Form Documentation The type of data used in the study. This can be MicroArray or MassSpec. Name Type Tooltip message MassSpec option MicroArray ...
NEW - 12 May 2005 - 16:21 by WillGray
DeanAndBonniesFarewellParty
Dean and Bonnie's Farewell Party
r2 - 11 Jun 2007 - 12:19 by WillGray
DeanBillheimer
Dean Billheimer Contact Info * Name: Dean Billheimer * Email: * Phone: * Comment: "The essential distinction in the problem of inference is the distinction ...
r10 - 15 Nov 2007 - 14:38 by WillGray
ElizabethKoehler
Elizabeth Koehler, MS Contact Info * Email: e.koehler #64;vanderbilt.edu * Phone: 322 7193 Education * University of Washington MS in Biostatistics, ...
r40 - 10 Jan 2012 - 10:29 by WillGray
FacultyAccomplishments
Summary of Faculty Accomplishments Calendar Year Articles Published in Peer Reviewed Journals Books and Book Chapters Published Memberships on National Committees ...
r3 - 15 Nov 2005 - 10:51 by ClaudiaCalderon
FantasyFootball
Fantasy Football What else did you think statisticians did for fun? Other than play ultimate. http://football.fantasysports.yahoo.com/league/biostat 2007 Results ...
r20 - 11 Mar 2010 - 15:01 by RobertGreevy
FrequentlyAskedQuestionsFAQ
Frequently Asked Questions (FAQ) Working Remotely Procedures for using Zoom Related Topics * Facilities and Resources * Getting Started at Vanderbilt Biostatistics ...
r148 - 13 Sep 2021 - 13:08 by DalePlummer
GeneralWfccmDesign
General WFCCM Design * Wfccm Bug Reports Goals * Version 1 * Generate Scores. * Write basic graphs. * Version 2 * Add Permuatation ...
r137 - 03 Jan 2006 - 12:16 by JeremyRoberts
HddacAdminGroup
HDDAC Administrative Group A comma seperated list of TWiki names of those users who have write access to the HDDAC web * Set GROUP = WillGray, MingLi, BasharShakhtour ...
r2 - 16 Oct 2007 - 10:50 by WillGray
HddacGroup
HDDAC Group A comma seperated list of TWiki names of those uses who have write access in the HDDAC web * Set GROUP = TwikiAdmin, WillGray, YuShyr, MingLi, HeidiChen ...
r11 - 20 Apr 2009 - 16:09 by WillGray
HowToNameATwikiTopic
How to Name a Wiki Topic This topic is designed to help you choose a good name for your new wiki topic/page. It's easy and will make using the wiki easier for others ...
r8 - 11 Dec 2009 - 09:47 by FrankHarrell
HowToSave10PercentAtCourtyardCafe
How To Save 10% at the Courtyard Cafe The Courtyard Cafe gives a 10% VUMC employee discount when you use your Commodore Card (id badge) to pay. Here's how to add ...
r9 - 22 Sep 2008 - 10:55 by RobertGreevy
HowtoBuildHomepage
A Checklist to Your Personal Homepage 1. Photo (refer to "How to Add Your Picture Onto the Homepage in 4 Easy Steps") 1. Contact information: address, phone ...
r5 - 04 Jan 2007 - 09:11 by WillGray
HuimingLi
* Name: HuimingLi * Email: * Phone Number: 3438608 * Comment: Personal Preferences (details in .TWikiVariables) * Horizontal size of text edit box: ...
r2 - 25 Oct 2005 - 13:50 by WillGray
ImproveTurnAroundTime
Templates for Grant Proposals * Statistical Components for Grant Proposals * Study Design * Sample Size Calculation * Statistical Method Templates for ...
r6 - 01 Jun 2006 - 10:07 by WillGray
IndividualEffortCertificationMeetings
Individual Effort Certification Meetings will last ten minutes each. Name September 29 October27 November November 10:30 ...
r6 - 22 Oct 2009 - 11:21 by SherryStokes
IntramuralFrisbee
Ultimate Frisbee Intramurals Yay frisbee! If you're interested in participating, please e mail Cole Beck or Jeremy Stephens. About Ultimate Ultimate frisbee is a ...
r77 - 21 Mar 2012 - 17:33 by ColeBeck
IntramuralSports
Biostatistics Intramural Sports This is the portal to the various Vanderbilt intramurals we've participated in. Here's a link to the official intramural calendar ...
r6 - 16 Sep 2010 - 17:37 by JeremyStephens
JoAnnAlvarez
JoAnn Alvarez, MA Biostatistician III E mail: joannmalvarez #64;gmail.com Office: 490 Preston Research Building My CV and resume (word file) Interests ...
r174 - 11 Sep 2018 - 21:35 by JoAnnAlvarez
July2010AllDeptMtg
July 13, 2010 (MRBIII, Room 1220 2:00PM) Good News * BINGO! * Winners Marcia and Alex * Linda returning home * Cindy Chen's R21 receives a very high ...
r16 - 26 Apr 2013 - 11:17 by JohnBock
JumpStartForNewBiostatisticians
Welcome to the Department of Biostatistics! Here are some useful resources for you to learn about R, Sweave/LaTeX, longitudinal data analysis, survival analysis and ...
r15 - 02 May 2013 - 06:07 by LindaStewart
KubuntuNotes
Kubuntu Notes Gutsy Gibbon Fuzzy Fonts After upgrading to gutsy, fonts might appear a little fuzzy. To fix this, go to System Settings Appearance Fonts and ...
r7 - 29 May 2009 - 12:02 by WillGray
LatestRFunctions
How to Obtain Updates to Individual Functions in R Packages Between Releases This page shows you how to read in source code to override functions in a package. The ...
r4 - 20 Nov 2006 - 11:42 by WillGray
LinuxAndSecurity
Linux Workshop: General Linux Information and Security Tips March 26, 2008 Linux Information Links for Further Reading * Linux.com and Linux.org. * Linux Today ...
r7 - 26 Mar 2008 - 14:36 by WillGray
LinuxWorkshopRProgramingTipsAndGotchas
R Programing Gotchas R Gotchas R has several 'features' that can trip up those who are not aware of them. Non Value Values. R contains several values are specially ...
r3 - 29 Jun 2009 - 10:42 by WillGray
MaMsAdditionalTools
Additional Tools * InfoLog.exe: Info Score generator * WGALog.exe: WGA Score generator * sam2003 07 07_v1.21.zip: SAM excel score generator * msjavx86 ...
r5 - 01 Sep 2004 - 09:55 by WillGray
MassionMDA
Massion MDA Mouse Study * Start Date: 31 August 2004 * Finish Date: 20 September 2004 * Research Drive Directory: /Massion/040831/ * Data Type: MassSpec ...
r4 - 21 Sep 2004 - 09:09 by WillGray
MassionSerum518
Massion Serum 518 Study * Start Date: 11 Nov 2004 * Research Drive Directory: /Massion/041111_serum 518/ * Data Type: MassSpec * Notes: * Status: ...
r3 - 10 Mar 2005 - 12:08 by WillGray
MassionSerumMaldiCelebrexTaxotere
Massion Serum MALDI Celebrex Taxotere Study * Start Date: 30 Aug 2004 * Research Drive Directory: /Massion/040830/ * data (data.txt, data_log10.txt) is ...
r14 - 10 Mar 2005 - 12:12 by WillGray
MicroArrayMassSpecProjectForm
Form definition for MicroArrayMassSpec projects Name Type Size Values Tooltip message ProjectClassification select 1 Project type StudyName ...
r2 - 12 May 2005 - 16:21 by WillGray
MicroArrayMassSpecProjectTemplate
Notes Analysis Requests 1 question 1 question Status 1 0% 1 0% Output Change Log * 20 Sep 2004 * change
r13 - 17 May 2005 - 11:31 by WillGray
ModdingMozilla
Linux Workshop Modding Mozilla Themes extensions can enhance Firefox and Thunderbird June 29, 2005 * The web site for Firefox and Thunderbird extensions is ...
r14 - 24 Aug 2006 - 11:54 by JeremyStephens
NewHireProcedures
New Hire Procedures * Information Technology Procedures for New Employees * Administrative Procedures for New Employees * Welcome to Vanderbilt 30 Day Survey ...
r12 - 20 Sep 2010 - 10:14 by LindaStewart
NimishGautam
* Name: Nimish Gautam * Email: nimish.gautam #64;vanderbilt.edu * Phone Number: * Comment: Personal Preferences (details in .TWikiVariables) * Horizontal ...
r3 - 30 Dec 2004 - 14:20 by NimishGautam
OurPeople
Our People Faculty (Full and Associate Professors) %Main.PhotoList.YUSHYRINFO% %Main.PhotoList.FRANKHARRELLINFO% %Main.PhotoList.WILLIAMDUPONTINFO% %Main ...
r175 - 04 Apr 2018 - 09:06 by DalePlummer
PotLuck2006RSVP
Potluck Party 2006 Thing To Bring Along 1 Beverages 1 Main Dishes 1 Side Dishes 1 Desserts RSVP Employee's Name Number To Attend To Bring Along ...
r3 - 27 Jan 2007 - 13:34 by RobertGreevy
PotLuckFeb2007ToBring
Biostatistics Potluck Party Monday, February 12 at 11:00 AM (Lunch); PRB 898 A B General Rules * For Biostat. faculty and staff only * Things don't need ...
r41 - 12 Feb 2007 - 09:46 by XuleiLiu
Project20050512212939
Tester Notes Analysis Requests 1 question 1 question Status 1 0% 1 0% Output Change Log: * date: 20 Sep 2004 * change
r2 - 17 May 2005 - 11:32 by WillGray
Project20050517112309
Massion Serum Notes * Serum data (A 291) w/ ProTS software preprocessing by JeremyNorris's group Analysis Requests 1 Normal vs Cancer * top57 ...
NEW - 17 May 2005 - 11:29 by WillGray
Project20050616150308
Lung Spores Take Notes Analysis Requests 1 question 1 question Status 1 0% 1 0% Output Change Log * 20 Sep 2004 * change
r2 - 17 Jun 2005 - 08:17 by WillGray
ProjectClassification
Project Form Documentation Project classification. Name Type Tooltip message MaMsProject option Ma/Ms Project Obsolete option Use this to hide ...
NEW - 12 May 2005 - 16:22 by WillGray
ProjectStatus
Project Form Documentation The status of the project as a whole. Name Type Tooltip message New option Active option Complete option
NEW - 12 May 2005 - 16:21 by WillGray
RClinicHelpfulRCode4
How to write your own functions and good R programing techniques Good R Programing Techniques R is quite different from regular programing languages in the way that ...
r7 - 13 Mar 2008 - 11:57 by WillGray
RGraphicsDotplot
Making Dot Charts in R Rachel Hayes brought a problem to R Clinic on 23Oct08. The Hmisc Dotplot function can produce multi panel dot charts with error bars while ...
r2 - 27 Oct 2008 - 11:09 by WillGray
RVim
R and VIM Syntax Highlighting and Indenting I modified the existing R vim syntax file, and created a vim R indent file since R's indention in vim was broken. Below ...
r7 - 06 Sep 2007 - 14:22 by WillGray
RecommendedReading
Recommended Reading In Reverse Chronological Order by Date of Publication Authors Title Journal Issue Page Comments Jones RH Bayesian information ...
r44 - 15 Jul 2014 - 13:55 by FrankHarrell
RedcapApiExportR
An R function for redcap exports through the API Here is an R function that exports data from redcap through the API within R. This function, along with new options ...
r4 - 18 Jan 2016 - 09:17 by FrankHarrell
RenamingFilesInVisualSourceSafe
Renaming files in Microsoft VSS This may sound tricky, but it's actually rather simple. The reason behind this method is to preserve the file history. It helps to ...
NEW - 30 Sep 2005 - 12:21 by WillGray
SchoolOfMedicineCommittees
School of Medicine Committees * Basic Science Chairs * Our representative to the School's Faculty Advisory Committee: Robert Greevy (2007 2009) following Patrick ...
r4 - 16 Jun 2011 - 11:02 by LindaStewart
ScrabbleServerRegistration
Scrabble Server Registration The server's current version is 1.6.2. Registration and Login Steps * Start PyScrabble * Click Find Public Servers * Click Add ...
r2 - 25 Jan 2010 - 16:50 by WillGray
SharedResourceGroup
Shared Resource Group * Set GROUP = BasharShakhtour, HeidiChen, TatsukiKoyama, WillGray, YuShyr, MingLi, FeiYe, DanAyers, DavidBiagi * Set ALLOWTOPICCHANGE ...
r8 - 03 Sep 2013 - 16:37 by ColeBeck
SharedResourceSvnSwitch
Using Subversion for Source Control Steps * Confirm nightly backup * Repositories on Biostatdebian * Configure SVN service * Test migration vss2svn on ...
r7 - 22 Dec 2005 - 13:07 by JeremyRoberts
SoftballPictures2009
Loading image. Please wait Intramural Softball May 21, 2009 Team Photo (L R) Nate, Will, Cole (L R) Cathy, Umpire, Jeremy, Patrick (L R) Will, Kylie, Jeremy, Nate ...
r8 - 25 Jan 2010 - 16:57 by WillGray
SoftballTeamShirts
Softball team shirt orders are due no later than August 26 at 4 pm. Please contact Seth with general questions regarding shirt orders, and contact Cole or Will with ...
r56 - 25 Jul 2013 - 15:12 by WillGray
SteveMeurerMtgItineraryJune
Steve Meurer, PhD, MBA, MHS Senior Vice President, Comparative Data Informatics http://biostat.mc.vanderbilt.edu/SteveMeurerJune1 Wednesday, June 1, 2011 TIME ...
r9 - 26 Apr 2013 - 11:17 by JohnBock
SweaveConvert
Converting Documents Produced by Sweave and knitr Converting from LaTeX to html The recommended format for statistical reports to send to collaborators is pdf produced ...
r46 - 08 Dec 2015 - 14:11 by FrankHarrell
SystemScriptHowto
How to Define Your Own System Command Scripts The following uses the small, handy pico editor. Suppose that the command script you want to create is called zzz. ...
r2 - 18 May 2009 - 14:01 by WillGray
TWikiUsers
List of Vanderbilt Biostatistics Wiki users To edit pages on this site, you must have a registered user name and password. You do not need to register if you just ...
r495 - 23 Apr 2009 - 15:36 by WikiGuest
TatsukiRcode
R code for tplot, kmplot and other functions. * RFunctions1.R: RFunctions1.R R code for other miscellaneous functions. * RFunctions2.R: RFunctions2.R R code ...
r165 - 26 Oct 2021 - 13:24 by TatsukiKoyama
TwikiAccessDiscussion
Twiki Access Discussion Problem As part of forming the High Dimensional Data Analysis Core, we set up the HDDAC web on the twiki. We want the data to be secure, ...
r4 - 13 May 2005 - 13:54 by ColeBeck
TwikiFirefoxExtensions
TWiki Firefox Add ons These are some add ons to help with using the TWiki. Navigation TWiki Browser Plugins has some Firefox search plugins for searching and ...
NEW - 31 Jan 2008 - 14:10 by WillGray
TwoStageIntroduction
Making Inference from a Simon's Two stage Design in Phase II Clinical Trials by Tatsuki Koyama * New page TwoStageInference
r4 - 05 Aug 2021 - 13:47 by TatsukiKoyama
VandyGoGreen
Vanderbilt has established an Office of Sustainability and Environmental Management; their web site SustainVU contains valuable information about conserving important ...
r2 - 02 Jun 2008 - 11:53 by WillGray
WebAppRegistry
Web Application Registry Members of the Department of Biostatistics and the Center for Quantitative Sciences have developed or participated in the development of web ...
r10 - 25 Jul 2018 - 15:31 by DalePlummer
WebStatistics2004
Statistics for Main Web in 2004 Current Web Statistics Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors ...
r7 - 18 Jul 2008 - 12:16 by ColeBeck
WebStatistics2005
Statistics for Main Web in 2005 Current Web Statistics Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors ...
r2 - 28 Sep 2007 - 08:57 by WillGray
WebStatistics2007
Statistics for Main Web in 2007 Current Web Statistics Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors ...
r2 - 21 Mar 2013 - 08:38 by TwikiAdmin
WebStatistics2008
Statistics for Main Web (2008) Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads ...
NEW - 16 Nov 2010 - 10:56 by TwikiAdmin
Wfccm2CommandLineDownload
Command Line Wfccm * Runs under Mono for Linux support * Incorporates basic Wfccm functionality
r2 - 12 Apr 2005 - 09:00 by WillGray
Wfccm2Guide
WFCCM 2 How To Step by step Step 1: Loading the Data and Information Sets * Go to "File Add a Data Set" to add the given data * The name of the Data ...
r16 - 15 Feb 2014 - 13:28 by WikiGuest
Wfccm2PublicDownload
* Version 1.0.00 dd mmm yyyy: Public release. Score generation and distance complete. For instructions, please refer to the guide. If you can not run the project, ...
r4 - 17 Jan 2006 - 11:41 by WillGray
WfccmAddGroupingsCriteriaManagers
Add DataGroupings and CriteriaManagers DataGroupings Working on a large project and having to create the same 6 groupings several times (incuding creating columns ...
r9 - 11 May 2005 - 16:05 by WillGray
WfccmAlgorithmCoxPH
Cox PH Algorithm
NEW - 14 Mar 2005 - 16:07 by WillGray
WfccmAlgorithmFDR
False Discovery Rate Algorithm Calculate adjusted p values using False Discovery Rate Controlling Procedures. FDR Algorithm predefined values: subSize of data ...
r6 - 09 Dec 2004 - 11:14 by WillGray
WfccmAlgorithmFisher
Fisher Algorithm Performed on a set of non negative numbers and labels of size N. There must be two specific labels. Label 1 must be 1 and label 2 must be 2. There ...
r5 - 09 Dec 2004 - 11:14 by WillGray
WfccmAlgorithmHu
Hu Algorithm function 1 : log likelihood to estimate logmu * f(logmu) = %$\sum(\frac{1}{2}*logsigma2 \frac{(X exp(logmu))^2}{2*exp(logsigma2)})$% * logsigma2 ...
r13 - 07 May 2009 - 14:11 by WillGray
WfccmAlgorithmInfo
Info Algorithm Performed on an ordered (ascending) set of numbers and labels of size N. There must be only 2 unique labels (Label 1 and label 2). Seperate the list ...
r4 - 21 Jan 2005 - 12:04 by WillGray
WfccmAlgorithmLikelihoodRatio
Likelihood Ratio Algorithm Suppose that we have data from stratum 0 and stratum 1. The test statistic is computed as : %$Z = 2Nlog(\frac{T}{N}) 2\sum N_jlog(\frac ...
r3 - 06 Apr 2005 - 10:03 by WillGray
WfccmAlgorithmLogRankWilcoxon
Log Rank and Wilcoxon Algorithm These tests are for comparison of two or more strata of survival data. Suppose that we have data from stratum 0 and stratum 1. Denote ...
r5 - 13 Sep 2005 - 14:20 by ColeBeck
WfccmAlgorithmPermutationTTest
Permutation TTest Algorithm Performed on a set of non negative numbers and labels of size N. There must be two specific labels. Label 1 must be 1 and label 2 must ...
r5 - 28 Oct 2004 - 16:41 by JoanZhang
WfccmAlgorithmSAM
SAM Algorithm The data is %$x_{ij}$%, i = 1, 2, ... p genes, j = 1, 2, ... n samples, and response data %$y_j$%, j = 1,2, ... n (%$y_j$% may be a vector). Generic ...
r12 - 06 Feb 2012 - 20:42 by WillGray
WfccmAlgorithmTTest
TTest Algorithm Performed on a set of non negative numbers and labels of size N. There must be two specific labels. Label 1 must be 1 and label 2 must be 2. There ...
r5 - 15 May 2009 - 23:56 by WillGray
WfccmAlgorithmWGA
WGA Algorithm WGA = \begin{displaymath} \frac{d_b}{k_1d_{1} k_2d_{2} \alpha} \end{displaymath} * description of letters * %$n_i$% is the total number of ...
r20 - 06 Feb 2012 - 21:29 by WillGray
WfccmAlgorithmWilcoxon
Wilcoxon Algorithm Performed on a set of numbers and labels of size N. There must be two specific labels. Label 1 must be 1 and label 2 must be 2. There can also be ...
r4 - 04 Jan 2010 - 17:26 by JoanZhang
WfccmBugReport20050516140742
No Score Summary The score summary was only giving the max values for SAM, WGA, and Hu instead of a table of possible cutoffs. The problem was occuring for a DataSet ...
r2 - 26 Apr 2007 - 08:47 by WillGray
WfccmBugReport20050810132022
Extra score summary row Summary.ScoreSummary sometimes puts a duplicate row at the very bottom. For example, WGA 0.01 Follow up on 17 Mar 2006 I haven't observed ...
r4 - 26 Apr 2007 - 08:46 by WillGray
WfccmBugReport20050810132327
Bad testing dataset information added training data set information while it's supposed to add testing data set information, it affected Summarypercentage class and ...
r2 - 26 Apr 2007 - 08:47 by WillGray
WfccmBugReport20050810132742
Bad path in state mainTree node showed training set folder name after running a testing set, it caused part of saved state couldn't work anymore since it can not find ...
r2 - 26 Apr 2007 - 08:48 by WillGray
WfccmBugReport20050825093746
Incorrect BallGraph Title The ballgraph was automatically generated when I clicked run 50 on a top200 graph. The ballgraph's title said it was run 100. It's has ...
r6 - 26 Apr 2007 - 08:48 by WillGray
WfccmBugReport20050829104513
No Ballgraph Generated When I click on model 1 of a cutoff, the ball graph is not generated. Is is trying to compensate for topN? If so, this is not a good solution ...
r5 - 26 Apr 2007 - 08:49 by WillGray
WfccmBugReport20050902164819
Cannot Save Cluster Unhandled exception 'incorrect parameter used' when trying to save a cluster of the entire dataset (not filtered by a winner list). F:\Lu\050326HJ ...
r4 - 26 Apr 2007 - 08:46 by WillGray
WfccmBugReport20050913122218
Cannot load Unix format datafile For some reason, MemoryMapDataSet is not correctly determining that Unix and Mac file formats use a single byte for newlines (CR or ...
r3 - 26 Apr 2007 - 08:49 by WillGray
WfccmBugReport20050922160446
Invalid specified cast This error occurs when trying to run Cross Validation Distance. The illegal cast occurs during the creation/setup of the SummaryPercentages ...
r3 - 26 Apr 2007 - 08:50 by WillGray
WfccmBugReport20050928132656
Object reference not set When trying to generate a ball graph for cross validation distance topN results, an unhandled exception occured. Object reference not set ...
r4 - 26 Apr 2007 - 08:50 by WillGray
WfccmBugReport20051010102418
Missclassified Patients 50% Threshold The graph for missed columns/patients in the testing data does not appear when the testing data classification is lower than ...
r4 - 26 Apr 2007 - 08:51 by WillGray
WfccmBugReport20051024105057
Cannot disply VizSpec when more than one averaged data loaded Describe the bug here.
r3 - 26 Apr 2007 - 08:51 by WillGray
WfccmBugReport20051024110037
Incorrect Double Progress bar when more than one distance run submitted, the outter progress bar shows "0 of n" or "1 of n ", it doens't show " n 2 of n" or "n 1 of ...
r2 - 24 Oct 2005 - 13:20 by WillGray
WfccmBugReport20051024140341
Incorrect VizSpectra Zoom function error occurs when continue use zoom function in vizSpec (normally afterusing 5 6 times zoom function); Grab function doesn't have ...
r4 - 26 Apr 2007 - 08:51 by WillGray
WfccmBugReport20051031161207
p values cannot be compeletely displayed when p values less than 0.000001, it shows 0.00000 in the information box.
r2 - 26 Apr 2007 - 08:52 by WillGray
WfccmBugReport20051101113226
Distance Permutation Number Not Loading Entering the distance p value permutation number works correctly, but it is not showing up when selecting the criteria. This ...
r3 - 26 Apr 2007 - 08:52 by WillGray
WfccmBugReport20051102144703
cannot show ROC based on cutoffs * no ROC curve shows up while the node shows up
r3 - 26 Apr 2007 - 08:53 by WillGray
WfccmBugReport20051130095245
Non delete I deleted groupings and re added them so I could re run the statistical tests. I saved state and re loaded. Then, there were multiple (2 or 3) score nodes ...
r3 - 26 Apr 2007 - 08:53 by WillGray
WfccmBugReport20060320132452
The Info Score There are two datasets. One is the whole dataset which includes all the samples, and the other only includes the samples I need. I use the same grouping ...
r3 - 26 Apr 2007 - 08:54 by WillGray
WfccmBugReport20060320133551
ROC Can not generate the ROC curve. Needs more information. Version number is incorrect.
r3 - 26 Apr 2007 - 08:46 by WillGray
WfccmBugReport20060519100152
Cannot write missed column report Steps to Reproduce Get the data from Bashar and run the same comparisons. Expected Behavior Observed Behavior Application threw ...
r3 - 26 Apr 2007 - 08:54 by WillGray
WfccmBugReport20060714084422
Panel not updated on new grouping created Steps to Reproduce Create a new grouping. Expected Behavior The grouping panel should updated to reflected the saved grouping ...
r3 - 26 Apr 2007 - 08:54 by WillGray
WfccmBugReport20060731104352
Error saving winner lists for cross validation Steps to Reproduce Run cutoff or topN cross validation distance. Expected Behavior Observed Behavior The first model ...
r3 - 26 Apr 2007 - 08:55 by WillGray
WfccmBugReport20060801125208
Duplicate distance results Steps to Reproduce Run distance, save state, close WFCCM, and reload. Expected Behavior Observed Behavior On loading a saved state, there ...
r2 - 26 Apr 2007 - 08:55 by WillGray
WfccmBugReportForm
Wfccm Bug Report Form Definition Name Type Size Values Tooltip message BugClassification select 1 WfccmBug, Obsolete Wfccm Bug BugStatus select 1 Outstanding ...
r2 - 22 Mar 2006 - 10:34 by WillGray
WfccmBugReportTemplate
Steps to Reproduce Expected Behavior Observed Behavior
r3 - 22 Mar 2006 - 10:33 by WillGray
WfccmBugReports
Bug Reports Create Bug Report Bug Name Version User Date Outstanding View/edit Name Version Reported Date ** ...
r25 - 26 Apr 2007 - 08:45 by WillGray
WfccmChartPanel
ChartPanel Public Methods * saveImage(String imgName) saves image of the chart (as a PNG file) to the given image name * setDimensions(float top, bottom, ...
r2 - 09 Dec 2004 - 11:11 by WillGray
WfccmClassDescriptions
Interface descriptions * IDataSet Interface for datasets. Class descriptions * DataContainer Parent class for the data classes * InformationSet ...
r48 - 12 Jul 2005 - 15:18 by WillGray
WfccmClassTemplate
ClassName Public Methods Properties Protected Methods Private Methods Virtual Methods Protected Members Exceptions Rationale Remarks
r6 - 29 Sep 2004 - 10:10 by WillGray
WfccmClusterNode
ClusterNode Enumeration NodeType * Node * Gene * Array Static (Class) Methods * ClusterNode Compare3(ClusterNode, ClusterNode, ClusterNode, bool) ...
r3 - 11 Mar 2005 - 10:32 by WillGray
WfccmClusterSummary
ClusterSummary NameRank Class * name * rank Public Methods * Load(string) Loads the given CDT file * string GetArryNameByRank(name, rank) given ...
r3 - 11 Mar 2005 - 10:34 by WillGray
WfccmCombinationManager
CombinationManager Public Methods * SetBases(ArrayList of int) Sets the sizes of the bases. * Arraylist GetCombination(int) Returns the 0 base indices that ...
r3 - 09 Dec 2004 - 11:21 by WillGray
WfccmCommandLineMethod
Console Wfccm Command line aspect of Wfccm. Limited capability extended. Todo * Add support for Shuo's preprocessed data log transformation not applicable ...
r3 - 22 Apr 2005 - 10:58 by WillGray
WfccmCommentingGuidelines
Commenting Guidelines * Add class/function header at time of creation * Use summary to describe a function/class. * Use value to describe a property ...
r12 - 19 Jul 2004 - 14:15 by JeremyRoberts
WfccmCriteria
Criteria Public Members * Property Name * Property Operator * Property Value * Property IgnoreNumPass Protected * string name Name of the ...
r7 - 10 Mar 2005 - 17:35 by WillGray
WfccmCriteriaManager
CriteriaManager Public Methods * CriteriaManager(CriteriaManager) The copy constructor. * Remove(string, string, double) Removes a score name, operator ...
r10 - 07 Apr 2005 - 14:12 by WillGray
WfccmCriteriaManagerPanel
CriteriaManagerPanel Public Methods * loadCM(CriteriaManager, ArrayList, bool) Takes the CriteriaManager to load, a list of score names, and whether or not the ...
NEW - 10 Dec 2004 - 15:28 by WillGray
WfccmCriteriaManagerWarning
CriteriaManagerWarning Confirms changing the CriteriaManager type on the CriteriaManagerPanel because all criteria and the STD function are removed.
NEW - 06 Apr 2005 - 09:47 by WillGray
WfccmCriteriaSet
CriteriaSet Public Methods * Property Pass * Property NumPass The number of rows that passed the evaluation. If IgnoreNumPass then don't count. * SetColumnValue ...
r10 - 21 Feb 2005 - 14:28 by JeremyRoberts
WfccmCrossValidation
Cross Validation TODO * Refactor Distance calculation. * Swap loops so the cross validation (kFold) loop is inside the TopNManager (c) loop. * ...
r14 - 10 Feb 2005 - 15:53 by WillGray
WfccmCutoffManager
CutoffManager Parent: CriteriaManager Public Methods * CutoffManager(CutoffManager) The copy constructor. * Add(string, string, double) Adds a score name ...
r10 - 09 Dec 2004 - 11:19 by WillGray
WfccmDataContainer
DataContainer Public Methods * DataContainer(DataContainer) Copy constructer. * AddColumn(string) Appends a new column of data, sets the name, and returns ...
r26 - 09 Dec 2004 - 11:12 by WillGray
WfccmDataGrouping
DataGrouping Public Methods * DataGrouping(DataGrouping) Copy constructor. * Add(string, string) Adds a Column by name and sets group descriptor (defaults ...
r20 - 07 Apr 2005 - 14:14 by WillGray
WfccmDataGroupingPanel
DataGroupingPanel Public Methods * loadDG(DataSetInfo, DataGrouping, bool, bool) Takes the data information, the grouping to load, and whether the grouping is ...
NEW - 10 Dec 2004 - 15:52 by WillGray
WfccmDataSet
DataSet Parent: DataContainer, Interface: IDataSet Public Methods * DataSet(DataSet) Copy Constructor overload that handles the name list. * SetDataPoint ...
r33 - 28 Apr 2005 - 14:32 by WillGray
WfccmDataSetPanel
DataSetPanel Public Methods * LoadDataSetPanel(DataSetInfo) loads the DataSet contained within the DataSetInfo object. If an InformationSet has also been assigned ...
r2 - 06 Apr 2005 - 09:36 by WillGray
WfccmDataStructureRefactor
This has been set aside for now, being replaced by memory mapped files. Temporary memory saving solution until C# 2.0 is officially released. Since an object takes ...
r2 - 28 Mar 2005 - 10:08 by WillGray
WfccmDistanceReport
DistanceReport Static Methods * WriteMissedColumn(ArrayList, string, bool, double) Will first filter distanceResults for runs where overall percent correct ...
r11 - 08 Mar 2005 - 15:05 by WillGray
WfccmDistanceResult
DistanceResult Public Members * FilteredScores List of ids, numPass and the modifiers. * CriteriaSet criteria * DistanceOutput train * DistanceOutput ...
r4 - 09 Dec 2004 - 11:22 by WillGray
WfccmExceptionCodes
* Copy and Paste will work * WfccmExceptionCodes Creation error "\n Failure when trying to create " this.GetType().ToString() " `" this.name "'!" Add row ...
r16 - 21 Jul 2004 - 16:36 by WillGray
WfccmExpression
Expression Public Methods * Expression(string) Creation constructor. Sets function to the passed string, checks the validity of the function and converts to ...
r8 - 09 Dec 2004 - 11:21 by WillGray
WfccmFilteredScore
FilteredScore Parent: Score Public Methods * FilteredScore(Score, CriteriaSet) Filters a score according to the criteria set. Creates the numPass column. ...
r7 - 09 Dec 2004 - 11:14 by WillGray
WfccmFunctionalityRequestsAndChanges
Functionality Requests * Change T test p value calculation from equal variance to unequal variance. * Eisen like data overview with sortable columns and groupings ...
r23 - 03 Mar 2006 - 12:37 by WillGray
WfccmGenericDataStructures
C# 2.0 (.NET 2005 Whidbey) supports generics * Change DataContainer to DataContainer T * Replace ArrayList with Generic.List T * Replace SortedList ...
r8 - 12 Jan 2006 - 16:29 by WillGray
WfccmIDataSet
IDataSet Public Methods * GetDataPoint(int, int) * GetColumnName(int) * GetColIndexFromName(string) * GetRowId(int) * GetRowIndexFromId(int) * GetRowName ...
r4 - 28 Apr 2005 - 11:03 by WillGray
WfccmInformationSet
InformationSet Parent: DataContainer Public * SetDataPoint(int, int, string) Set the data at that point. * GetDataPoint(int, int) Gets the data at that ...
r16 - 09 Dec 2004 - 11:13 by WillGray
WfccmLargeDataSetCapability
Large Data Set Capability Detailed Time Line and Tasks Large DataSet Implementaiton Apr18 May 06 3 weeks 1. Implement objects. 1. Build the interface. ...
r13 - 23 May 2005 - 10:35 by WillGray
WfccmLargeDataSetSubClassProsCons
Large DataSet SubClass Pros and Cons Description For large dataset capabilities, we might need to make the read only MemoryMapDataSet a subclass of DataSet. Pros ...
r7 - 26 Apr 2005 - 16:48 by WillGray
WfccmMemoryMapDataSet
MemoryMapDataSet Interface: IDataSet Public Methods * MemoryMapDataSet(string) Constructor that takes the path/file name. * MemoryMapDataSet(string, int) ...
r3 - 28 Apr 2005 - 14:30 by WillGray
WfccmMissedValues
MissedValues Note: This class's structure is dependent entirely on DistanceReport.WriteMissedColumn() function Public Members * highlightRuns Arraylist of highlighted ...
r2 - 09 Dec 2004 - 11:09 by WillGray
WfccmNetwork
Network Public Methods * Network(IPAddress, int) Constructor for starting a connection. * Network(string, int) Constructor for starting a connection. ...
r4 - 12 Jul 2005 - 15:00 by WillGray
WfccmNetworkListener
NetworkListener Public Methods * NetworkListener(int) The constructor. * Start() Starts listening for incoming connections. * Stop() Stops listening ...
NEW - 12 Jul 2005 - 15:17 by WillGray
WfccmNotes
Meeting Notes Nov 3 * Tasks * First stage, build database and interfaces * Haojie, Huiming, Joe * 15 Dec 2005 April 5 * Slides ...
r15 - 28 Nov 2005 - 09:42 by HuimingLi
WfccmOptionData
OptionData Public Methods * OptionData() * OptionData(string) * Copy() * Load(string) * Save(string) Properties * AutoLoadLog * AutoLoadInfo ...
NEW - 28 Apr 2005 - 15:50 by WillGray
WfccmOptions
Options in Wfccm2 Instead of forcing the load and save dialogs, we could have import/export options with buttons or a menu. Are we going to only use the flat file ...
r12 - 17 Mar 2006 - 16:39 by WillGray
WfccmPartitionedDataSet
PartitionedDataSet Public Methods * PartitionedDataSet(string) Constructor that takes the path to the DataSet. * PartitionedDataSet(string, int) Constructor ...
r2 - 09 Dec 2004 - 11:24 by WillGray
WfccmPrePostHowto
WFCCM Pre Post Guide This is a guide for running pre post analysis in WFCCM. For a pre post analysis, there needs to be a pre treatment and post treatment sample for ...
r2 - 18 May 2005 - 13:58 by WillGray
WfccmProjectData
ProjectData Public * Collection of DataSetInfo * string working directory * class DataSetInfo * path for data set * path for score set ...
r6 - 09 Dec 2004 - 11:24 by WillGray
WfccmRequirements
Requirements Statement The software to be designed will control the generation of scores to be used is the distance analysis of genes and proteins via WFCCM. The program ...
r10 - 12 Aug 2004 - 15:16 by WillGray
WfccmRfunctions
Rfunctions Public Methods * Average(ArrayList) Returns the mean. * StDev(ArrayList, double) Returns the standard deviation. * Var(ArrayList) Returns ...
NEW - 14 Mar 2005 - 16:52 by WillGray
WfccmScoreExpression
ScoreExpression Parent: Score Public Methods * GenerateScores(DataSet, DataGrouping) defaults to ignore zeroes * GenerateScores(DataSet, DataGrouping, bool ...
r5 - 09 Dec 2004 - 11:14 by WillGray
WfccmScoreHu
ScoreHu Public Methods * ScoreHu() Default Constructor. * ScoreHu(ScoreHu) Copy Constructor. * ScoreHu(string) Loads the score from a file. ...
r2 - 10 Feb 2005 - 14:46 by WillGray
WfccmScoreSam
ScoreSam Parent: Score Public Methods * ScoreSam() the default constructor. * ScoreSam(ScoreSam) copy constructor. * ScoreSam(string) Constructors ...
NEW - 06 Apr 2005 - 15:19 by WillGray
WfccmScoreTTest
ScoreTTest Parent: Score Public Methods * ScoreTTest() the default constructor. * ScoreTTest(ScoreTTest) copy constructor. * ScoreTTest(string) ...
r3 - 06 Apr 2005 - 15:21 by WillGray
WfccmSourceFileStructureRefactor
Vicc.Biostat Wfccm.Forms * CriteriaManagerPanel * CriteriaManagerWarning * DataGroupingPanel * DataSetPanel * DataSetView * DistancePanel * InformationPane ...
r2 - 10 Jan 2006 - 15:06 by WillGray
WfccmSummaryModule
Summary Public Methods * ScoreSummary(ArrayList) Returns an InformationSet that summarizes all of the Scores given. * ScoreSummary(Score, ...) ScoreSummary ...
r2 - 09 Dec 2004 - 11:24 by WillGray
WfccmSummaryPanel
SummaryPanel Public Methods * SummaryPanel() Default constructor * SummaryPanel(SummaryPercentages) create a new Summary panel with the given percentages ...
r2 - 09 Dec 2004 - 11:10 by WillGray
WfccmSummaryPercentages
SummaryPercentages Public Members * ArrayList Grp1 Grp2 Pcts Train Test Percentages * ArrayList Train Test Pcts Percentages for training or testing ...
NEW - 08 Mar 2005 - 15:07 by WillGray
WfccmTestingGuidelines
Please put your feedback on this system. I think that this will work, but I am open to better solutions. Jeremy. At this point in time, use the console tester to write ...
r6 - 06 Jul 2004 - 16:33 by WillGray
WfccmTopnManager
TopNManager Parent: CriteriaManager Public Members * TopNManager(TopNManager) The copy constructor. * Add(string, string, double) Adds a score name, operator ...
r12 - 09 Dec 2004 - 11:19 by WillGray
WikiWalkthrough
Foswiki or TWiki? Foswiki is a fork of the TWiki software. If you want to know why the fork was created, read this. It was in our best interest to switch because ...
r14 - 26 Apr 2013 - 11:17 by JohnBock
WillGrayLeftBar
Customise this topic; samples and ideas available at TWiki:TWiki.WebLeftBarCookbook. * * WfccmBugReports * WfccmDistributedComputing * MicroArrayMassSpec ...
r12 - 17 Jan 2017 - 17:17 by WillGray
WillGrayNotifyList
WillGrayNotifyList This topic defines the e mail notifications I receive when certain topics change. * Set ALLOWTOPICCHANGE = WillGray Topic immediate notifications ...
r13 - 07 Mar 2011 - 10:04 by WillGray
Number of topics: 187
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