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2011RmSCoursePhotos
2011 RMS Course Photos Main.JohnBock 22 Jul 2011
2011SupervisorsRetreat
SUPERVISORS RETREAT Thursday, March 31, 2011; 8:30 11:30AM; 419 Light Hall TIME TOPIC PRESENTER 8:30AM8:45AM Welcome and Overview Linda Stewart ...
2012RMSShortCourse
#TopAnch #AboutAnch About the Course Three Session Short Course for Regression Modeling Strategies by Frank E. Harrell, Jr., Ph.D., Professor ...
2013RMSShortCourse
Regression Modeling Strategies Short Course 2013 #TopAnch #AboutAnch About the Course Three Session Short Course for Regression Modeling ...
2014NewYearPotluck
Department New Year Potluck Luncheon Event Details Date: This Friday, January 10th Time: 12pm 1pm Location: Big Conference Room/Break Room at 2525 WEA ...
2015RMSShortCourse
Regression Modeling Strategies Short Course 2015 #AboutAnch About the Course Four Session Short Course for Regression Modeling Strategies by Frank E. Harrell, Jr ...
5-Year
Loading image. Please wait Caption number 1 This is the caption of image number 1 This is the caption of image number 2 This is the caption of image number 3 This ...
AFewSuggestions
Some modest suggestions to make Linux desktop computing easier and safer Linux Workshop presentation for Wednesday 31 March 2010 xrandr output LVDS1 mode 1280x800 ...
ASAP
ASAP: An open source framework for building and executing a pipeline to preprocess next generation sequence data and variant calls. Advanced Sequence Automated Pipeline ...
ASAPIssues
ASAP Release History Version Description Date 1.0 Initial Release May 02, 2012 1.1.0 Added annotation and few other features Jun 12, 2012 ...
ATMtg2March10
Bi Monthly Administrative Team Meeting March 2, 2010 11:30AM 12:30PM 569PRB Good News * Welcome: * Audrey Carvajal, Temporary Administrative Support (VTS ...
ATMtg4May10
Administrative Team Meeting May 4, 2010 11:30AM 12:30PM 569PRB Good News Abby will be headlining (with Abby and the Soul Catchers) at the Lowertown Music and Arts ...
ATMtg6Jul10
Administrative Team Meeting July 6, 2010 11:30AM 12:30PM Patio, Main office * Good News * Linda moves back home * Robert and Aixiang homes are progressing ...
ATOM
ATOM: Association Test via Optimally weighted Markers URL of this page: http://biostat.mc.vanderbilt.edu/ATOM This program is written in R (www.r project.org). The ...
AddAccountOutlook
How to add another email account to your Outlook client * Open Outlook * Click on the File tab * Click on the Add Account button * Enter ...
AdminProc
New Staff Process/Procedures * Department Administrator will contact HR consultant re new position, then request preparation of PDQ or PDQ (EZ) for posting of ...
AdminRetreatSept172010
Loading image. Please wait Administrative Retreat September 17, 2010 (L R) 1 (L R) 2 (L R) 3 (L R) 4 (L R) 5 (L R) 6 (L R) 7 (L R) Audrey and Eve...our event coordinators ...
AdminTeamMtgsDecember09
December * PCard Policy: New requirements and transaction control log * Cardholders review their transactions daily/weekly in the PaymentNet * Cardholder ...
AhraKim
Ahra Kim Biostatistician II Email: ahra.kim #64;vanderbilt.edu Phone: 615.343.3298 Vanderbilt University Medical CenterDepartment of Biostatistics2525 West ...
AihuaBian
* Name: Aihua Bian * Email: aihua.bian #64;vanderbilt.edu * Phone Number: 615 322 2052 *
AixiangJiang
Aixiang Jiang, MS Assistant in Biostatistics Email: aixiang.jiang #64;vanderbilt.edu Phone: 615.936.7360Fax: 615.936.2602 Education * Master of Science ...
AlexFun
My R Functions Create time intervals data for time varying covariates in survival analysis When several time varying covariates present in survival analysis, creating ...
AlexZhao
Zhiguo (Alex) Zhao, M.S. Biostatistician III Contact Information Office Address : 571 Preston Research Building VICC Cancer Biostatistics Center Department ...
AlexandriaJensen20220131
%HEAD{ NAME="Alexandria Jensen, PhD Candidate in Biostatistics" AFFILIATION="University of Colorado, Denver" TITLE="Statistical methods for network association ...
AlfrescoNotes
Alfresco User Notes Link for our Alfresco server: * http://alfrescologin.com/ * http://vbiostat.alfrescologin.com/ * https://biostats.app.vumc.org Do not ...
AllDepartmentQuarterlyMeeting
Upcoming Meetings 2016 * November 30, 2016 2015 * October 7th, 2015* * January 7th, 2015* Past Meetings 2014 * February 5, 2014* 2013 November 6th, 2013 August ...
AllDeptMtgNov302016
All Department Meeting Wednesday, November 30, 2016 1:30 p.m. to 2:30 p.m., MRB III Room 1220 PEOPLE * Departures * Meridith Blevins, Assistant In Biostatistics ...
AllDeptMtgOct72015
All Department Meeting Wednesday, October 7th, 2105 1:30 p.m. to 2:30 p.m. MRB III Room 1220 Reminders PEOPLE * Departures * Steven Chen * Pengcheng ...
AmberHackstadt
Amber Hackstadt, PhDAssistant Professor E mail: amber.hackstadt@vanderbilt.edu Phone: (615) 875 9512 Vanderbilt University Department of Biostatistics 2525 West ...
AmyGraves
Amy J. Graves Biostatistician II E mail: amy.j.graves@Vanderbilt.edu Phone: 615.343.4023 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
AmyPerkins
Amy M. Perkins, MS Principal Biostatistician E mail: Amy.Perkins@vumc.org Phone: 615.875.9582 Fax: 615.343.4924 Vanderbilt University Medical CenterDepartment ...
AndrewSpieker
Andrew J. Spieker, PhDAssistant Professor of Biostatistics E mail: andrew ~dot~ spieker "at" vumc.org Phone: 615.875.4426 Fax: 615.343 ...
AndrewTomarken
Andrew J. Tomarken, Ph.D. Associate Professor of Biostatistics E mail: andrew.j.tomarken@vanderbilt.edu Website: Vanderbilt PsychologyVanderbilt UniversityDepartment ...
AnesGrantProposals
Recent Grant Proposals Project ID PI name Grant Name Funding Agency Submission Date Results Bruehl01 Bruehl, Stephen CRPS after Total Knee Replacement ...
AnesShortCourse
Introduction to Biostatistics Short Course Thanks to Chris Slaughter and Frank Harrell for allowing me to use their course notes as a basis for developing many of ...
AnesthesiologyCollaboration
Anesthesiology Biostatistics Collaboration Plan Ongoing studies Project PI Staff Page Updated Status Global Burden of Pain Survey Tracy Jackson ...
AngelAn
Angel An , M.S. Biostatistician III E mail: angel.an@vanderbilt.edu Phone: (615) 936 8847 Fax: (615) 343 4924 Office: D 2217A Medical Center North (MCN) Vanderbilt ...
AnimatedVaxGen
The link "vaxgen2.svg" at the bottom of this page is an animated VaxGen sensitivity analysis of the difference in the probability of initiating antiretroviral therapy ...
ApplicationProcess2008
Staff Biostatistician Hiring Process The following is an outline of the application and hiring process for Department of Biostatistics staff statisticians. If you ...
April2010AllDeptMtg
April 20, 2010 (MRBIII, Room 1220 1:30PM) Good News * PEOPLE * New employees: Audrey Carvajal, Office Assistant II (part time); Seth Martin, Financial ...
April2011AllDeptMtg
* Good News PEOPLE * Computing techniques/updates (FEH) * Discussion Board (N Mercaldo) and R Clinic (C Fonnesbeck) * New faculty and staff * Steve ...
ArchivedAnalyses
Archived Analyses Norwood J, Jenkins CA, Bhatta M, Turner M, Bian A, Nelson J, Ransby I, Hughes D, Koethe JR, Sterling TR, Shepherd BE, Castilho J. Hormonal Contraception ...
AttachDocs
Main.JohnBock 07 Apr 2011
AudreyCarvajal
Audrey Carvajal Manager Administrative Email: audrey.carvajal@vumc.orgPhone: 615.343.7376Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
AyumiShintani
Ayumi K. Shintani, PhD, M.P.H. Associate Professor of Biostatistics E mail: ayumi.shintani@vanderbilt.eduPhone: 615.936.1954Fax: 615.343.4924 Vanderbilt University ...
BCarlinBayesianShortCourse
#table1 {font family: Helvetica, Arial, Helvetica, sans serif; width:30%; border collapse:collapse;} #table1 td, #table1 th{ text align:center; width:16.6666%; font ...
BIOS6341Course
Syllabus Homework 1 Other course information is available in Brightspace (https://www.vanderbilt.edu/brightspace/) Main.AmberHackstadt 12 Aug 2018
BaseballDataManip
Cole Beck's Baseball data set problem The goal of this problem was to 'reshape' the original data set (bos_pit.csv) to the desired data set. * bos_pit.csv The following ...
BaseballPlotPlots
Colorado Rockies Do they score more at Home? * col00.pdf: * col02.pdf: * col04.pdf: * col06.pdf: * col0006.pdf:
BasharShakhtour
Contact information * Name: Bashar Shakhtour * Email: bashar.shakhtour #64;vanderbilt.edu * Phone Number: 343 8755
BasicSciClinicAnalyses
Recommendations, Analyses, and Data for Biostatistics Basic and Animal Research Clinic Click here for older notes Biostatistics vs. Lab Research (aka I Need 3 Patients ...
BayesianDataAnalysisWithOpenBUGSAndBRugs
Bayesian Data Analysis With OpenBUGS, BRugs, and JAGS IBC *members: Yi He, William Wu, Heidi Chen, Angel An, Cindy Chen and Chuan Zhou Software download: * WinBUGS ...
BayesianModelingOfLatentHeterogeneityInComplexSurveyData
%HEAD{ NAME="Rebecca Anthopolos, PhD" AFFILIATION="Columbia University" TITLE="Bayesian Modeling of Latent Heterogeneity in Complex Survey Data and Electronic ...
BaysingerWheeL
Anesthesiology Collaboration Project Baysinger Background Information * PI: Baysinger * Date: 11/18/2012 * Title: Pinwheel (P) and the neuropen (N) ...
BenSaville
Benjamin R. Saville, Ph.D. Adjunct Assistant Professor Vanderbilt University School of Medicine Department of Biostatistics 2525 West End, Ste. 11000 Nashville ...
BenSavilleWorkshop20180914
%HEAD{ NAME="Ben Saville, PhD" AFFILIATION="Berry Consultants" TITLE=" Introduction to Bayesian methods and implementation via R/JAGS" IMAGELINK="http://biostat ...
BillRenfrew
William Renfrew no longer works in the Department of Biostatistics.
BioMod
General Handouts and Reference Material on Biostatistical Modeling * Syllabus from a course on Biostatistical Modeling (updated 9Jan03; click here for a pdf file ...
Biogradprinter1Setup
Macintosh Setup for Brother HL 5470DW monochrome laser printer This topic outlines the steps to install the "biogradprinter1" printer on Macintosh computers. For command ...
Bios311Syllabus2013
Attachments Notes: * Notes on Rosner Ch 1 and 2 * Bayes and ROC lecture * Law of large numbers lecture * What if there were no LLN lecture * Likelihood ...
Bios311Syllabus2014
Bios 311 Syllabus The syllabus will be updated weekly. Thursday, August 21 Learning Objectives (LOs) * Get a sense of the class; determine if it is a good fit ...
Bios330Assign0
BIOS 330 Assignment Zero Your assignment is to install and configure R and RStudio to produce an html file from the reproducible knitr document below. 1 Install ...
Biosketches
Biosketches Notes How to map (mount) the network share Please contact or direct requests for Biosketch and Other Support to our editorial assistant, Michael Wade ...
BiostatEvents
Our Special Events Upcoming Events 2017 * Faculty Lunch * The Breakroom Challenge Potluck 2016 * 2016 Holiday Potluck * 2016 Department Faculty ...
BiostatIIData
Vanderbilt University Master of Public Health Biostatistics II The following data sets are used in my class. See the reference for these data sources here. Stata ...
BiostatIILectureNotes
Vanderbilt University Masters of Public Health Biostatistics II Lecture Notes for 2010 Text: Dupont WD: Statistical Modeling for Biomedical Researchers, 2nd Edition ...
BiostatisticsInJapan
Biostatistics in Japan #21271; #37324; #22823; #23398; #34220; #23398; #37096; #12288; #33256; #24202; #32113; #35336; #37096; #38272; Division of Biostatistics ...
BiostatisticsTwoClassPage
Vanderbilt University Master of Public Health Biostatistics II 514 5509 Overview Modern multivariate analyses, based on the concept of generalized linear models ...
BlevinsMPH
On March 13, we will have a class discussing sample size calculation in biomedical research with guest lecturer, Meridith Blevins. We will have a demonstration of ...
BlevinsMSCI
On September 22, we will have a class discussing data visualization in biomedical research with guest lecturer, Meridith Blevins. We will review a basic recipe for ...
BlevinsVIRDE
On October 12, we will have a 3 hour seminar discussing measurement, data collection, analysis and sample size determination in biomedical research with guest lecturers ...
BonnieLaFleur
* Name: Bonnie LaFleur * Email: * Phone Number: * Comment: Research Interests * Statistical analysis * Permutation tests * Linear and nonlinear ...
BootstrapMeansSoftware
Software and Example Code for Bootstrap Confidence Intervals for Means and Differences in Means The following uses the simple nonparametric bootstrap percentile approach ...
BosenbergSED
Bosenberg's (1995) Paper and SED Data Notes Bosenberg, A. T. (1995) "Skin epidural distance in children." Anaesthesia. 50: 895 897. * SED Data (digitized from ...
BoxComNotes
Notes for box.com on Linux Please read VUMC's documentation to get started. The notes below supplement the documentation. Note: VUMC does allow us to use box.com ...
BryanShepherd
Bryan Shepherd, PhD Professor Vice Chair of Faculty Affairs E mail: bryan.shepherd@vanderbilt.edu Phone: 615 343 3496 Fax: 615 343 4924 Office: 2525 West End ...
BryanShepherdJan12
Department of Biostatistics Seminar/Workshop Series Estimating the Optimal CD4 count for HIV infected Persons to Initiate Antiretroviral Therapy Bryan Shepherd, ...
BsAsa
Materials for Bryan Shepherd Important Components of ASA Nomination Guidelines for Letters of Support ASA Fellows Home Page * Letters of support are generally ...
CBarrFeb18
Department of Biostatistics Seminar/Workshop Series From neuroscience to national science Three problems across the union of geometry and policy Christopher D. ...
CPPAReport
HIPPA study * Motivation * Specific aims * Statistical Analysis * Results * Conclusion * Meetings PARS study * Motivation * Specific aims ...
CSS4PL
Bioinformatics_supporting_files.tgz: Simulation programs and results for our paper: Airey DC, Li C (2011) Functional mapping of drug dose response quantitative trait ...
CTSAGroupMeetings
Biostatistics Ethics Meetings VICTR Operations Workgroup Meeting Report Ethics Biostatistics Group Biostatistics Group VICTR Biostats Meeting * Report out ...
CVJournalClub
Cardiovascular Medicine Journal Club Statistical Questions and Commentary by Frank Harrell Randomized trial of intravenous streptokinas, oral aspirin, both, or neither ...
CVProj
Cardiovascular Medicine Active Projects Manuscript DAYLIGHT: Randomized Clinical Trial of High Dose Vitamin D for Treating Hypertension * PI: Tommy Wang * ...
CanBiojclub
Date: Presenter: Title: Journal Link or .PDF file: Main.PaulMatrisian 07 Jan 2010
CancerBiostatJournalClub
Division of Cancer Biostatistics continuing education Cancer biostatistics journal club Discovery Lecture series * 2011/10/27 Lora Hooper, PhD. "Immune adaptations ...
CarmenTekwe12Sep2018
%HEAD{ NAME="Carmen Tekwe, PhD" AFFILIATION="Texas A M University" TITLE="Functional Multiple Indicators, Multiple Causes Measurement Error Models" IMAGELINK ...
CategorizingContinuousCovariates
A plot that illustrates the effect of categorizing continuous covariates in a logistic regression model The idea behind this problem is the fact that fitting a categorized ...
CathyJenkins
Cathy Jenkins Biostatistician IV E mail: cathy.jenkins@vumc.org Phone: 615.322.9068 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
CeAiraArvinger
Ce'Aira M. Arvinger, M.Ed. Administrative Assistant II Email: ceaira.m.arvinger@vanderbilt.edu Phone: 615.936.6760 Fax: 615.936.2602 Vanderbilt University School ...
CeasarAim1ThreeYear
CEASAR Aim 1 with 3 year follow up data This will address the same aim 1 objective comparing treatments with respect to function outcomes that we did for the one year ...
CedMastersBiostat
Title: Continuing Education for Masters Biostatisticians Third Thursday of the month. Participants: Tebeb Gebretsadik, William Wu Brief description: The objective ...
CenterForSurgQualOutcomes
Main.JoAnnAlvarez 09 Nov 2012 Vanderbilt Center for Surgical Quality Outcomes Research Projects on their own page * CeasarData * CeasarProjTxVars * CeasarProject ...
CepiNotes
Threshold Results for CES D Ok, thanks. Try to get in touch with me by 2pm if you can. I've finished the parts of the threshold tasks for CES D. I copied the results ...
CepiPlans
Baby Books Project Documents Baby Books Research Aims: Here is an editable document that includes prioritized research aims for the Baby Books project. Logic Model ...
ChangYu
* Name: Chang Yu, PhD, Associate Professor, Vanderbilt University Medical Center * Email: chang.yu #64;vanderbilt.edu * Phone: (615)322 8422 * Fax: (615)343 ...
CharlesDupontPictures
Here Be pictures * Set ALLOWTOPICCHANGE = Main.CharlesDupont Main.CharlesDupont 07 Oct 2010 * sun_interface.png: * solar_system.png: ...
CharlesDupontStuff
/Sandbox/' method='post' * New example topic: "}% This is a Change This is a Change THis is another change Why wont you change ...
CharlesDupontTesting
graph layout { Potash Alab; Tallow Alab; Alab Soap; Ash Ashery; Ashery { Lye Potash }; Bone Bowyer; Wood Bowyer; Bowyer ...
ChartAccts
Chart of Accounts * VU Chart of Accounts Biostatistics Specific Chart of Accounts * NOTE: Department Master Cost Center list is in secure share drive.
ChrisFonnesbeck
Christopher Fonnesbeck Adjoint Associate Professor of Biostatistics Research Interests * Computational statistics * Hierarchical modeling * Bayesian statistics ...
ChrisSlaughter
Chris (James C.) Slaughter, DrPH Vanderbilt University School of Medicine Department of Biostatistics 2525 West End Avenue, Suite 11000 Nashville, TN 37203 1738 james ...
ChrisSlaughterFamilyHistory
Main.ChrisSlaughter 13 Jun 2009 History of the Slaughter Name Introduction The following is my initial attempt to describe the long, paternal branch of my family ...
ChristianneRoumie
* Name: Christianne Roumie * Email: christianne.roumie #64;Vanderbilt.Edu * VUMC faculty database * Updated_CVD_Analyses.zip * Updated_CVD_less_than_65 ...
ChristinaSaunders24Oct2018
%HEAD{ NAME="Christina Tripp Saunders, PhD" AFFILIATION="Post Doctoral FellowVanderbilt University School of Medicine" TITLE="Estimating causal mediation effects ...
ChronAndAsDataExamples
* chronTalk_2005_05_23.s:
ChuanZhou
Chuan Zhou, PhD Assistant Professor of Biostatistics E mail: chuan.zhou@vanderbilt.edu Phone: 615.343.4472 Fax: 615.343.4924 Office: MCN D 2207Vanderbilt ...
ChuckF
Charles F. Federspiel, Ph.D.Professor of Biostatistics\ Emeritus Email: charles.federspiel@vanderbilt.edu\ Phone: (615) 343 4096\ Fax: (615) 343 4924 ...
ChunLi
Chun Li, Ph.D. Associate Professor, Department of Biostatistics Investigator, Center for Human Genetics Research E mail: #99; #104; #117; #110; #046; #108; #105 ...
ChunStataNotes
Chun's Stata Notes In this page, EMS refers to Essential Medical Statistics, a very good introductory book on biostatistics. Getting help Help pages: Type help ...
ChungILi
Chung I Li Bioinformatician I Email: chung i.li@vanderbilt.eduPhone: 615.936.7652 Fax: 615.936.2602 Vanderbilt University School of MedicineDivision of Cancer ...
ClaudiaCalderon
Claudia Calderon, MBA Assistant To The Chair Email: claudia.calderon@vanderbilt.edu Phone: 615.343.9940 Fax: 615.343.4924 Vanderbilt University School ...
ClinModVal
Validation of Discoveries and Validation of the Predictive Performance of Clinical Models Note: On 1Nov04, Steve Goodman, statistical editor of the Annals of Internal ...
ClinPharmExercises
Assignments and Exercises There will be a few short assignments to stimulate discussion and to identify weak areas. We will discuss each during class. Exercise 1 ...
ClinPharmKeyConceptsAndReviewQuestions
Lecture 1: Introduction Key Concepts 1 Biostatistics is the application of statistical methods to biological research including laboratory experiments, medical ...
ClinPharmLabs
Labs for Data Analysis Periodically we will devote a class session to applied data analysis. The purpose of the lab is two fold: (1) to assist with planning your analysis ...
ClinRCT
Clinical Trials Methodology * Trial Protocol Tool from http://www.practihc.org, the PRACTIHC collaboration Pragmatic RAndomized Controlled Trials in Health Care ...
ClinStat
General Statistical Ideas * Biostatistics for Biomedical Research: Primary Notes R Code for Chapters in Notes * Data science open training * Glossary of ...
ClinicAnalyses
Clinical and Health Research Clinic Click here for 2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014, and before. Current Notes (2022) 2022 October 20 Andrew Wooldridge ...
CodeSensitivityPerProtocol
The analysis code for the paper, 'Sensitivity analysis of per protocol time to event treatment efficacy in randomized blinded trials' by Gilbert PB, Shepherd BE, and ...
CodeSensitivitySGD
The following code was used for the manuscript "Sensitivity analyses comparing time to event outcomes only existing in a subset selected postrandomization and relaxing ...
ColeBeck
* Name: Cole Beck * Email: cole.beck #64;vumc.org * Phone: 3 6007 * Location: 2525 * Comment: You should call me if you need access to the Biostatistic ...
CollaborationAssignments
Biostatistics Collaborations The table below includes assignments on our Collaboration Plan as well as other long term collaborative arrangements, some of them supported ...
CommandLineFun
Linux Workshop Helpful Command Line Utilities July 27, 2005 Quick Special Symbols Primer * ~ expands to your home directory (Example: cd ~) * . expands ...
Commencement2009
Main.DianeKolb 18 May 2009 Commencement 2009 Loading image. Please wait Commencement 2009 Do What? Go Where? The Faculty Five The Faculty Five in All Their Splendor ...
Commencement2010
Commencement 2010 Loading image. Please wait Commencement 2010 All Dressed and Ready 2 Go The Faculty Seven The Faculty Seven in All Their Splendor Off to the event ...
ComparingWhenToStart
The following two files were used for the analyses presented in the manuscript "Applying two methods for estimating the optimal CD4 threshold for initiating antiretroviral ...
ComplexDataJournalClub
Journal Club for Analysis of Complex Datasets Sebastiani et al, Nature Genetics 37:435;2005: Genetic dissection and prognostic modeling of overt stroke in sickle ...
ComplexTable
Generating a complex table of drug, disease, and phase Synopsis of Problem: * Trying to create a table which lists the drugs and diseases for a given phase or combination ...
ComputingClinic
Computing Clinic The Computing Clinic is currently on an extended hiatus (as of 12/2013) while the department's administration structure is being reorganized. We ...
ConorLynch
* Name: Conor Lynch * Email: conor.lynch #64;vanderbilt.edu * Phone Number: * Comment: Personal Preferences (details in .TWikiVariables) * Horizontal ...
ConstantinAliferis
Constantin Aliferis, M.D., Ph.D. Adjunct Associate Professor of Biostatistics E mail: constantin.aliferis@nyumc.org Website: NYUNew York University Langone Medical ...
ContinuingEdu
Continuing Education/Methods Implementation Workshop Continuing Education/Methods Implementation Workshops are scheduled on the third Friday of each month at 1pm 2pm ...
CourseBios312
BIOS 312: Modern Regression Analysis (Spring 2013) Instructor * Chris Slaughter, DrPH, Assistant Professor of Biostatistics * james.c.slaughter 'at' vanderbilt ...
CourseBios323
Bios 7323: Applied Survival Analysis Summary: This is an introductory course in the analysis of time to event data where censoring and truncation may be present. Upon ...
CourseBios341
BIOS 6341: Introduction to Probability and Statistical Theory (Fall 2016) See BIOS6341Course for the course's current syllabus. Instructor * Bryan Shepherd, ...
CourseBios352
Statistical Collaboration Health Sciences II Instructors MarioDavidson Course Number 2014.01.SPR.GS.BIOS.352 Meeting Times Monday 1:00pm 3:00pm ...
CourseBios362
BIOS 362: Advanced Statistical Inference (Statistical Learning) Instructor * Matthew S. Shotwell, PhD * matt.shotwell #64;vumc.org * 11118B: 2525 West End ...
CourseBios6311
BIOS 6311: Principles of Modern Biostatistics Space is limited and enrollment requires special permission. Priority is given to graduate students from the Biostatistics ...
CourseBios6321Spring2020
BIOS 6321: Clinical trials and experimental design (Spring 2020) For students only * Restricted access Instructor * Tatsuki Koyama, PhD, Associate professor ...
CourseCausalInference
Causal Inference (Spring 2022) Instructor * Bryan Shepherd, PhD, Professor of Biostatistics * bryan.shepherd #64;vanderbilt.edu; 2525 West End, 11119; 615 343 ...
CourseDSI5640
DSI 5640: Modeling Machine Learning I Instructor * Matthew S. Shotwell, PhD * matt.shotwell #64;vumc.org * 11118B: 2525 West End Avenue * 615 875 3397 ...
CqiProjects
Continuous Quality Improvement Projects Continuous Quality Improvement (CQI) means continuous actions performed in order to enhance work environment, processes and ...
CqsSummerInstitute
CQS Summer Institute 2016 Biostatistics 1 * Lecture note (Last update: 7/31/16) * Introduction to R * IntroductionToR.R * practiceCeasarData.csv ...
CqsSummerInstitute2017
CQS Summer Institute 2017 Biostatistics I Instructor: Tatsuki Koyama, PhD * tatsuki.koyama #64;vumc.org * 582 Preston Research Bldg * 615.936.1232 Course ...
CtsaBayesianAdaptiveDesign
Bayesian Adaptive Study Design Supported by VICTR Biostatistics Core The VICTR biostatistics core has a Bayesian adaptive study design component. Under this effort ...
DAfshartousSept30
Department of Biostatistics Seminar/Workshop Series Mixed effects Models with Variance Heterogeneity David Afshartous, PhD Assistant Professor of Statistics, Division ...
DMEx3
Preparing data for survival analysis Our original data file, temp.csv, has repeated glucose values for each subject (DeID) at various times points (Time) from both ...
DRTCWorkshops
Materials for DRTC Workshops
DalePlummer
Dale Plummer Manager Application Development dale.plummer@vumc.org Phone: (615) 343 4101 Fax: (615) 343 4924 Dale Plummer Department of Biostatistics Vanderbilt ...
DalePlummerSeptember242014
Tools for Team Work Frequently we work in teams. Team work requires that we find some way to store and share code, data, notes, comments, to do lists, documents, and ...
DalesStataCodeExamples
Stata Code Examples Reproducible research with Stata I have recently become aware of a Stata package called MarkDoc. It process the scml file and runs the result ...
DanAyers
Gregory D. (Dan) Ayers, M.S. Senior Associate in Biostatistics E mail: dan.ayers #64;vumc.org Phone: 615.343.9180 Fax: 615.343.4924 Division of Cancer Biostatistics ...
DanByrneCTSAideas
The main idea is that the leaders at NIH want to encourage medical researchers to be more efficient in using the taxpayers' money to provide solutions to the citizens ...
DanaBlakemore
Dana L. Blakemore, M.S.Biostatistician II E mail: dana.blakemore@vanderbilt.edu Phone: (615)343 2158 Office: S 2323 Medical Center North (MCN) ...
DandanLiu
Dandan Liu, Ph.D. Associate Professor E mail: dandan dot liu at vanderbilt dot edu Phone: 615 322 8318 Fax: 615 343 4924 Office: 11135 Vanderbilt University ...
DandanLiu31Oct2018
%HEAD{ NAME="Dandan Liu, PhD" AFFILIATION="Vanderbilt University Medical Center" TITLE="Target Population Risk Prediction with Time to Event Outcome" IMAGELINK ...
DanielByrne
Daniel W. Byrne Director of Artificial Intelligence Research, AVAIL Advanced Vanderbilt Artificial Intelligence Laboratory Senior Associate in Biostatistics ...
DarleneLollie
* Hey! * Name: Darlene Lollie * Email: darlene.lollie #64;vanderbilt.edu * Phone Number: 615 936 3995 * Comment: Personal Preferences (details ...
DataAnalysisDisc
General Data Analysis Discussion Board Discussions related to Rafe Donahue's 11Oct06 seminar in the Department FrankHarrell's comments Rafe's excellent seminar yesterday ...
DataAuditSimulationCode
## R code used for the simulations in the manuscript "Accounting for data errors discovered from an audit in multiple linear regression" by Bryan E. Shepherd and Chang ...
DataSets
NOTE This page is obsolete. Instead use https://hbiostat.org/data Datasets Most of the datasets on this page are in the S dumpdata and R compressed save() file ...
DataTransmissionProcedures
Procedures for Preparing Datasets for Analysis and for Transmission to the Department of Biostatistics Data Sharing Data must be in a rectangular format with one ...
DataValidationMethods
This web page will be used to post information and software packages of statistical methods for data validation and audits. Our basic idea is to use information learned ...
DatadensityFunction
The generic datadensity() function The datadensity() function is a generic functions used to show data densities in more complex situations. There are two class specific ...
DavidAfshartous
David Afshartous, Ph.D. Research Associate Professor Department of Biostatistics Vanderbilt University 2525 West End, Ste. 11000 Nashville, TN 37203 e mail: ...
DavidBiagi
David Biagi Email: david.biagi #64;vanderbilt.edu Phone: 615 936 5175 Education: Bachelor of Science: Lipscomb University, December 05 Projects: * WfccmR GUI ...
DavidSchlueter
David Jeffrey Schlueter Graduate Student Vanderbilt University CV CV_2017.pdf Links * Github * Gists Contact E mail david.j.schlueter #64;vanderbilt ...
DavidTabb
David Tabb Contact Info * Email: david.l.tabb #64;vanderbilt.edu * Phone Number: 936 0380 * Comment: In the laboratory there are no fustian ranks, no brummagem ...
DeanAndBonniesFarewellParty
Dean and Bonnie's Farewell Party
DeansSandBox
Statistics Grants from the NIH Louise Ryan * nihgrants.pdf: NIH Grants Information
DemingMi
Deming Mi Biostatistian II E mail: deming.mi@vanderbilt.edu Phone: Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment of BiostatisticsS ...
DepartmentPrintersWindows
Installing Department Printers on Windows Computers Note this is specific to the HP Color LaserJet M651 printers in the Department of Biostatistics. Click here for ...
DepartmentWinterEventDecember52008
Biostatistics Winter Event Friday, December 5; 11:30 a.m. 1:00 p.m.; large conference room (D 2221) Loading image. Please wait The delicious spread! The delicious ...
DeptComputing
Department Computing Operations * Frequently Asked Questions (FAQ) * Getting Started at Vanderbilt Biostatistics (includes IT information) * Linux Workshops ...
DeptGoals
Our Department Vision What is Biostatistics?Biostatisticians are specialists in the evaluation of data as scientific evidence. They understand the generic construct ...
DeptNewsSep2010
Good News People New Employees David Afshartous, Hui Nian and Hank Domenico Administrative Team Roles and Responsibilities Community Giving Campaign Leaders Seth ...
DeptOps
Department of Biostatistics Operations wiki Faculty * Biosketch Information (see also Curriculum Vitae) * Procedures for submitting grant application ...
DeptReminders
Reminders for Department Faculty and Staff Effort Reporting 1 At all times know the sources of your salary support and the percent efforts from each source. You ...
Design
The Design Package The Design package is now obsolete. R users must use the rms package instead * Overview of the Design Library * Online Help Documentation ...
DesignExamples
Examples of Use of rms Functions * Survival Analysis and Nomogram Graphing for Prostate Dataset * Nomogram for Various Predicted Values from Parametric Survival ...
DiffGraphics
Lag Difference and Residual Graphics for Spatial Time Series The following are graphics that went into making our poster handout for the JSM 2006 Data Expo. For this ...
DocProcess
General Information about LaTeX and other Document Processing Tools * Comprehensive TeX Archive Network * Online LaTeX Documentation FAQ Schneider's Resources ...
DonnaBock
Donna Bock, Administrative Officer * Email: donna.bock #64;vanderbilt.edu * Phone Number: 936 8048 Department Responsibilities
DynamitePlots
Dynamite Plots More * The height of a bar indicates the mean, and the vertical line on top of it represents the standard deviation (or standard error). ...
EMERGEData
eMERGE Data Preparation / Geocoding Wiki Current Status Institution Status Date Comments/History Vanderbilt University Data Returned 09/02/2014 ...
EPSLatexTables
Useful Stuff in R: Inserting Latex Tables into Microsoft Word Theresa A Scott, M.S. Biostatistician II, Department of Biostatistics Vanderbilt University School ...
EditorEdification
Editor Edification Kate * Kate KDE advanced text editor * Kile KDE integrated LaTeX environment Features * Modes: block selection VI * Replace ...
EffortCalculator
#effortTable { font family:"Trebuchet MS", Arial, Helvetica, sans serif; width:75%; border collapse:collapse; } ...
ElizabethHeitmanMar9
Department of Biostatistics Seminar/Workshop Series Emerging International Standards for Research Integrity: The 2010 Singapore Statement Elizabeth Heitman, PhD ...
ElizabethKoehler
Elizabeth Koehler, MS Contact Info * Email: e.koehler #64;vanderbilt.edu * Phone: 322 7193 Education * University of Washington MS in Biostatistics, ...
ElizabethStuart17Oct2018
%HEAD{ NAME="Elizabeth Stuart, PhD" AFFILIATION="Associate Dean for Education, Professor Depts of Mental Health, Biostatistics, and Health Policy and Management ...
EmacsEss
Emacs and ESS EmacsSpeaksStatistics more Emacs is an incredibly powerful text editor. It can be programmed to do anything. It was written before the advent of ...
EmacsLaTeXTools
Emacs, LaTeX, and UNIX Tools for Windows Users More Here Note: * The major components below are automatically available in Linux with very little effort (e.g ...
EmailSMTPChange
Email SMTP Change Required The Vanderbilt IT group is changing the way it provides SMTP service for those individuals who use an IMAP or POP3 email client (e.g. Thunderbird ...
EmailfromFrankLinda
/WereAllEars.jpg It’s time for Vanderbilt’s 2008 Community Survey! The 2008 Community Survey began today (March 10) at 12:01 AM and will end at 11:59 PM on March ...
EmergencyPreparednessPlan
Expectations for reporting to work during an inclement weather yellow or orange alert. Department exempt and non exempt staff should use good judgment in deciding ...
EmpLike
Empirical Likelihood Study Group Organizer: Chun Li Purpose Empirical likelihood is a nonparametric method of statistical inference. It has potential applications ...
EmployeeRecognition
Employee Recognition The goal of this page is have a record of Department Member's recognition for work on projects that are reported in Vanderbilt and other news ...
EncryptionToolsForWorkstations
Encryption Tools for Workstations and Laptops Linux Workshop presentation 27 May 2009 On January 7, 2009, Dr. Stead broadcast an email message in which he discussed ...
EnduringConcepts
The Enduring Concepts Work Group Discussions Overview of Curriculum 2.0 The purpose of the Curriculum 2.0 project is to develop a new model for educating physicians ...
Epi8323Data
Epi 8323: Design and Analysis with Time to Event Data (Spring 2021) Instructor * Chris Slaughter, DrPH, Associate Professor of Biostatistics Main Course Web ...
EstimatingHeterogeneousTreatmentEffectsWithCensoredDataViaFullyNonparametricBayesianAcceleratedFailureTimeModels
%HEAD{ NAME="Nicholas Henderson, PhD" AFFILIATION="Johns Hopkins University" TITLE="Estimating heterogeneous treatment effects with censored data via fully nonparametric ...
EthanHuang
Yi (Ethan) Huang, M.S. Biostatistician II Email:yi.huang@vanderbilt.edu Phone: (615) 875 8620 Vanderbilt University School of MedicineCenter for Quantitative ...
Ethics
Research Ethics and Responsible Conduct of Research Vanderbilt Ethics web sites * Responsible Conduct of Research * Center for Biomedical Ethics and Society ...
EveAnderson
Eve Anderson Administrative Assistant II * Email: eve.a.anderson #64;vanderbilt.edu * Phone: 615.322.5543 Education: * Bachelor of Fine Arts: Middle ...
EvelynWu
Evelyn Wu Biostatistician II E mail: yi chen.wu@vanderbilt.edu Phone: 615.936.8815 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
EwoutSteyerberg
* Name: Ewout Steyerberg * Email: E.Steyerberg #64;ErasmusMC.nl * Phone Number: 31 10 408 7053 * Comment: Personal Preferences (details in .TWikiVariables ...
FEHarrellRMS
REGRESSION MODELING STRATEGIES with Applications to Linear Models, Logistic Regression, and Survival Analysis by FE Harrell * The book was published June 5 2001 ...
FHHandouts
Presentations by Frank E Harrell Jr Note: Slides from more recent talks are contained in the Biostatistics for Biomedical Research handouts available at ClinStat The ...
FHHobbies
Hobbies Jazz Guitar Classical Guitar Trumpet; goal is to be a decent player in 2022 Favorite Quotes * If a man will begin with certainties, he shall end in ...
FacMtg1Feb12
Good News People * Supervisor/faculty retreat Mar 30, 2012 Service * Business administrative update * Faculty compliance * Conference ...
FacMtg1Sept10
General Faculty Meeting 1Sept 10 * Good News People * New Employees: David Afshartous, Hui Nian and Hank Domenico * Administrative Team Roles and Responsibilities ...
FacMtg2Nov11
Faculty Meeting November 11, 2011 View faculty meeting combined minutes for months of October and November 2011 Here * Good News People * Welcome new faculty ...
FacMtg5Nov08
General Faculty Meeting 5 Nov 08 * Good News * Report on visits to other biostat groups in AMCs * Consulting policy * Book ordering * Biosketches ...
FacMtg5Nov14
General Faculty Meeting 5 November 2014 People Growth Finance * Ron to discuss the following areas: * dbconnect requests * Hardware/Software purchases ...
FacMtg5Oct11
Faculty Meeting October 5, 2011 View faculty meeting combined minutes for months of October and November 2011 Here * Good News People * New faculty and staff ...
FacMtg7Dec11
Good News * Promotion * Tatsuki Koyama to Research Associate Professor * Heid Chen to Research Assistant Professor * William Wu to Research Assistant ...
FacRetreat
Faculty Retreat 2015 11 13Department of Biostatistics2525 West End Avenue Archive Used during retreat: https://public.etherpad mozilla.org/p/VbiostatRetreat Vision ...
FacTimeReporting
Faculty Time Reporting * Question: How is vacation, sick, bereavement, and personal time reported? * Answer: This is a department based decision, it's not ...
FacultyLeavePolicy
Faculty Leave Policy Benefits Click here to review Leave information in the Faculty Manual Click here to see general information at Vanderbilt University Human Resources ...
FantasyFootball
Fantasy Football What else did you think statisticians did for fun? Other than play ultimate. http://football.fantasysports.yahoo.com/league/biostat 2007 Results ...
ForLoopRegression
Generating multiple regression models in a for loop Often, we wish to generate multiple regression models that are all similar, but all different. For example, all ...
FrankFan
Education MS in Bioinformatics, Dec 2009 Georgetown UniversityMS in Biostatistics, Dec 2007 University of Louisville Work Experience Biostatistician II Jan 2010 ...
FrankHarrell
Frank E Harrell Jr, PhDProfessor of BiostatisticsFounding Chair E mail: f.harrell@vumc.org Phone: 615.322.2001 Fax: 615.343.4924Assistant: Tawanna ...
FrankHarrellDec5
Department of Biostatistics Seminar/Workshop Series Some New Directions in Statistical Computing Frank E. Harrell, Jr., PhD Professor Chair, Department of Biostatistics ...
FrequentlyAskedQuestionsFAQ
Frequently Asked Questions (FAQ) Working Remotely Procedures for using Zoom Related Topics * Facilities and Resources * Getting Started at Vanderbilt Biostatistics ...
FunnyStat
Funny Quotes and Interesting books on Statistics * Some Quotable Quotes for Statistics, by J.E.H.Shaw * How We Know What Isn't So, by Thomas Gilovich * Why ...
GCRCNoonWorkshops
Handouts and Datasets
GIST
GIST: Genotype IBD Sharing Test URL of this page: http://biostat.mc.vanderbilt.edu/GIST GIST is a method for detecting association between marker genotypes and IBD ...
GWAsimulator
GWAsimulator: A rapid whole genome simulation program URL of this page: https://biostat.app.vumc.org/GWAsimulator Version 2.1, updated the Linux version to conform ...
GenClinicAnalyses
Health services research, diagnosis, and prognosis Click here for 2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014, and before. Current Notes (2022) 2022 October ...
GenPolicy
General Policies of the Department * Professional Development Program * Summary of Travel Policy * General purchasing procedures * Staff and faculty relocation ...
GeographicSocialDeterminants
Main.JonathanSchildcrout 31 Oct 2020 Supplementary Materials for "Should we implement geographic or patient reported social determinants of health measures in cardiovascular ...
GnupgInstructions
GnuPG Privacy Guard Instructions These instructions tell you how to install and configure the high security free and open source encryption/decryption software called ...
GoogleDocsForReproducibleManuscripts
Google Docs for reproducible manuscripts Google Docs is a cloud based word processor which offers: * simultaneous editing * flexible file sharing * revision ...
GradPrinterMac
Install biostatcolor5 Printer on Macintosh Computers This topic outlines the steps to install the biostatcolor5 printer on Macintosh computers. For command line steps ...
GradStudentPictures
Main.LindaWilson 31 Aug 2012 * carol_nixon_resized.jpg:
GradStudentsHelpfulExamples
Main.LaurieSamuels 30 Jul 2012 Helpful examples for and from graduate students * CloserLookSoyerHogarth.pdf: A closer look at “How economists get tripped up ...
Graduation2008
Three Wise Guys Graduation, 2008 Patrick Arbogast, Frank Harrell Bill Dupont
GrantPolicies
Policies and Procedures for Grant Proposals Biostatisticians in the Department of Biostatistics participate in grant development in various ways including: * assisting ...
GrantTemplate
Below are the 3 files needed to build a grant proposal that was deemed acceptable by the NIH in February 008. That said, things may change. Note, that when you actually ...
Greport
greport Package: Graphical Reporting for Clinical Trials * Presentation * How to videos * Github repository * CRAN * Changelog Viewing Reports You ...
GuanhuaChen
Guanhua (Josh) Chen, PhD Assistant Professor Department of Biostatistics and Medical Informatics University of Wisconsin Madison email: gchen25 #64;wisc.edu ...
GutsyInstall
First you need to download the latest ISO from kubuntu. Burn the ISO onto a CD and you will have a Kubuntu live CD. If you don't know how to make an ISO, ask the ...
HPCClassProject
* ExecutiveSummary
HWECC
HWECC: Hardy Weinberg test for case control data URL of this page: http://biostat.mc.vanderbilt.edu/HWECC This program is written in R (www.r project.org). The main ...
HWETRIO
HWETRIO: Hardy Weinberg test for trio data URL of this page: http://biostat.mc.vanderbilt.edu/HWETRIO This program is written in R (www.r project.org). The program ...
HakmookKang
Hakmook Kang, PhD Associate Professor of Biostatistics E mail: hakmook.kang@vanderbilt.edu Phone: 615.343.1906 Fax: 615.343.4924 Office: 2525 West End Ave. ...
HallwayDisplay
Department Hallway Display As of December 2013, The "Hallway Display" is not operating due to the department's move from Medical Center North to 2525 West End Avenue ...
HallwayDisplayQueue
Each of the images in the attachments are displayed on the Hallway Display.
HanqingCao
Cao, Hanqing (Susan), PhD #26361; #28698; #28165;Instructor in SurgeryAssistant in Biostatistics Phone: 615.936.7515 Fax: 615.936.0185 Vanderbilt ...
HeatherPrigmore
Heather L. Prigmore Senior Biostatistician E mail: heather.l.prigmore@vumc.org Phone: (615) 875 4995 Fax: (615) 343 4924 Vanderbilt University Medical ...
HeidiChen
Heidi Chen, PhD Research Associate Professor in Biostatistics E mail: heidi.chen #64;vanderbilt.edu Phone: 615.936.7360Fax: 615.936.2602 Vanderbilt University ...
HeitmanSeminarJuly08
Department of Biostatistics Seminar/Workshop Series "Ethical Standards in Biostatistics: The American Statistical Association's Ethical Guidelines for Statistical ...
HeitmanSeminarMay08
Department of Biostatistics Seminar/Workshop Series "Ethical Standards in Biostatistics: The American Statistical Association's Ethical Guidelines for Statistical ...
HemaKenchanna
Hemalatha Kenchanna Administrative Assistant II hema.s.kenchanna #64;vanderbilt.edu Phone Number: 615 343 0153 Fax: 615 343 4924 Office: S 2323 MCN
HenryDomenico
Henry (Hank) Domenico Principal Biostatistician E mail: henry.domenico@vumc.orgPhone: 615.875.3119Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
HighD05May05
Section 1 In the first section, Dr. Li gave us a talk about the Mass Spectrometry data in his experiment. Please see the attachment below. Section 2 Deming gave ...
HighD05May27
Section 1 In the first section, we talked about the projects in our hands: Fumiko's data and Dr.Li's coming data. Section 2 The mass spectra calibration problem ...
HighD09Jun05
Section 1 In the first section, we talked about Fumiko's and Take's data sets. Section 2 The mass spectra calibration problem is discussed, and on Friday Shuo Chen ...
HighD28Apr05
Jonathan Xu and Huiming Li gave us wonderful talks about the binnging algorithm and calibration. The main questions remain in Huiming's PSB's curve's statistical meaning ...
Hmisc
Hmisc Package Go to https://hbiostat.org/R/Hmisc Main.FrankHarrell 15 Feb 2004, 26 Apr 2004, 13 Jun 2004, 12 Sep, 17 Oct, 19 Nov, 24 Nov 2004, 2 Jan, 14 Dec 2005 ...
HmiscNew
New Functions in the R Hmisc Package summaryM In place of summary(group ~ a b c, method='reverse') (which calls summary.formula) use summaryM(a b c ~ group ...
HmiscSummaryFormulaFunction
Using the Hmisc package's summary.formula() function This following is an illustration of the many uses of the Hmisc package's summary.formula() function. The sample ...
Hourglass
Hourglass Hourglass is a simple time tracking application for your desktop. Features * Running timer for the activity you're working on * Untimed activity tracking ...
Housing
Housing for guests attending Short Courses Vanderbilt has a specific web page that lists local hotels and negotiated rates for visitors to VUMC. Please follow this ...
HowToBootstrapCorrelatedData
Applied Nonparametric Bootstrap with Hierarchical and Correlated Data Introduction Hierarchy. Correlated data may often be represented using a nested hierarchy. Consider ...
HowToCreateAnRPackage
How to Create an R Package 5 Easy Steps 1. Create R functions, classes, and data objects interactively Copy and paste the code below from here: ecg.R. R version ...
HowToOpenUnicodeDataFiles
How To Open Unicode Data Files While some programs open Unicode and ASCII data files equally well, some statistical packages and programming languages require a little ...
HowToPresent
Tips for Better Presentations * Be sure to motivate the talk by describing the problem you are trying to solve * Consider your audience. If you are addressing ...
HtmlToTwiki
Html2Twiki perl script This is a brute force simple script to quickly convert your html files to TWiki syntax. It doesn't do a complete convertion, but gets 80% of ...
HuiNian
Hui Nian Biostatistician III E mail: hui.nian@vanderbilt.edu Phone: 615.875.3004 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment of Biostatistics ...
HuiyunWu
* Name: Huiyun (William) Wu * Email: huiyun.wu #64;vanderbilt.edu * Phone Number: (615) 936 2788 * Comment: 6 2788 Personal Preferences (details in .TWikiVariables ...
IkukoFunatogawa
Ikuko Funatogawa, PhD Title Visiting Scholar Email: ikuko.funatogawa #64;vanderbilt.edu Phone: 615.936.6263Fax: 615.936.2602 Cancer Biostatistics CenterVanderbilt ...
ImprovePresentationAndCommunicationSkillsCommittee
Communication Skills Committee The goal of the communication skills committee is to foster good oral and written communication skills within the department of Biostatistics ...
ImprovePresentationAndCommunicationSkillsWritingSkills
Some Inspiring Material Journal Style Requirements http://www.icmje.org/ Sources http://www.writing.eng.vt.edu Writing workshop http://www.vanderbilt ...
ImproveTurnAroundTime
Templates for Grant Proposals * Statistical Components for Grant Proposals * Study Design * Sample Size Calculation * Statistical Method Templates for ...
IntramuralFrisbee
Ultimate Frisbee Intramurals Yay frisbee! If you're interested in participating, please e mail Cole Beck or Jeremy Stephens. About Ultimate Ultimate frisbee is a ...
IntramuralSoftball
Faculty/Staff Softball Intramurals About Softball The Game (short version of procedures) 1 As a team, we are committed to having some fun together. 1 No pressure ...
IntramuralVolleyball
Volleyball Intramural Sports Intramural volleyball starts soon! E mail Jeremy Stephens if you want to play. Doesn't look like we'll have enough people. Dates To ...
IntroBiostatCourse2006
IGP 304: Statistics for Biomedical Research Instructor: Chun Li, Ph.D. (chun.li #64;vanderbilt.edu; 515D Light Hall; 322 2884) Assistant: David Reif (david ...
IntroBiostatCourse2006StataLab
IGP 304: Stata Labs Some words from the instructor Knowing the software is vital to your learning of statistics and your course performance. If you learn statistics ...
IntroBiostatCourse2006StudentQuestions
Students' Datasets #RyanQuestion060113 Ryan's question on dichotomization (01/13/2006) Ryan asked this question: Here's something that sounds trivial, but I think ...
IntroBiostatCourse2007
IGP 304: Statistics for Biomedical Research (Spring 2007) Instructors: Chun Li, Ph.D. (chun.li #64;vanderbilt.edu; 515D Light Hall; 322 2884) Leena Choi, Ph.D. (leena ...
IntroBiostatCourseBlog
Chun's course blog Beginning words: Blogging is totally new to me. I try to experiment this so that I can help you understand the course and statistics in general ...
IntroBiostatCourseHW2
Homework 2 (due on Monday, February 6) Please note: * Problems will be added until the last class before the due date. * No electronic submission unless explicitly ...
IntroBiostatCourseHW3
Homework 3 (due on Monday, February 20) Please note: * Problems will be added until the last class before the due date. * No electronic submission unless explicitly ...
IntroBiostatCourseHW4
Homework 4 (due on Wednesday, April 5) Please note: * Problems will be added until the last class before the due date. * No electronic submission unless explicitly ...
IntroBiostatCourseHW5
Homework 5 (due on Wednesday, April 19) Please note: * Problems will be added until the last class before the due date. * No electronic submission unless explicitly ...
IntroBiostatDisc
Statistics for Biomedical Research Discussion Board Go to WelcomeGuest to learn about twiki. You will see a place to click to go to the TWikiRegistration page to ...
IntroStatRhomeWork1
Introduction to Statistics Using R Homework 1 1. a) Read the file attitude.dat using read.table. Download file attitude.dat. b) The " 99" values denote missing ...
IreneFeurer
Irene Feurer, Ph.D. Research Professor of Biostatistics E mail: irene.feurer #64;vanderbilt.edu Website: Vanderbilt School of Medicine Vanderbilt UniversityTransplant ...
JKittelsonDec8
Department of Biostatistics Seminar/Workshop Series Bayesian trial monitoring: Separating the baby from the bathwater John Kittelson, PhD Associate Professor, Department ...
JSampsonApr1
Department of Biostatistics Seminar/Workshop Series Selecting SNPs to Correctly Predict Ethnicity Joshua Sampson, PhD Post Doctoral Fellow, Department of BiostatisticsYale ...
JackiePennings
function hidedisplay(elementClass){ var x = document.getElementsByClassName(elementClass); for (i = 0; i /* Change font on whole page*/ html body { font family:Roboto ...
JacksonPainMeta
Notes 1 pain prevalence stratified by population type (workers/general/elderly), for each pain type (8); "Pain Tables by Type global review 12 aug TJ.docx" 1 gender ...
January2010AllDeptMtg
January 12, 2010 (MRBIII, Room 1220 2:00PM) Good News * PEOPLE * Personnel Update: Introduction of New Employees, Promotions and Departures ...
January2011AllDeptMtg
Good News PEOPLE * New faculty and staff: * Division * Ce'Aira Arving, Administrative Assistant (temporary) * Yolanda Ayuso, Administrative Assistant ...
January2015AllDeptMtg
All Department Meeting Wednesday, January 7th, 2105 1:30 p.m. to 2:30 p.m. MRB III Room 1220 IT ANNOUNCEMENT * Computer Virus PEOPLE * Departures ...
January52009AllDeptMtg
Good News PEOPLE * New Faculty and Staff * Abby Burke, Administrative Assistant III * Jing He, Computer Systems Analyst I * Steven Kish, Administrative ...
JbAsa
Materials for Jeffrey Blume Important Components of ASA Nomination Guidelines for Letters of Support ASA Fellows Home Page * Letters of support are generally ...
JeffHornerNov14
Department of Biostatistics Seminar/Workshop Series R Package Development with RStudio Jeff Horner, B.S. Computer Systems Analyst III, Department of Biostatistics ...
JeffSloanItinerary1
Jeff A. Sloan, PhD Itinerary Wednesday, May 7, 2008 TIME PERSONS/EVENT MEETING LOCATION 10:15AM10:55AM Frank E. Harrell, Jr., PhD, Professor and Chair ...
JeffreyBlume
Jeffrey D. Blume, PhD Professor of Biostatistics Professor of Biomedical Informatics Director of Graduate Education, Data Science Institute Vice Chair for Education ...
JeffreyHorner
Name Jeffrey Horner Position Systems Analyst Email jeff.horner at vanderbilt.edu Phone 615 322 8606 Curriculum Vitae I am an open source ...
JeffreyHornerTestBibTool
Medical Citations for Statistical Issues General:
JeffreyHornerTestPage
Main.JeffreyHorner 01 May 2009
JenkinsEMCode
JenkinsEMCode Manuscript Code Yiadom MYAB, Mumma BE, Baugh CW, Patterson B, Mills AM, Salazar G, Tanski M, Jenkins CA, Vogus TJ, Miller KF, Lehmann CU, Wang ...
JenniferMorse
function hidedisplay(elementClass){ var x = document.getElementsByClassName(elementClass); for (i = 0; i /* Change font on whole page*/ html body { font family:Roboto ...
JenniferThompson
Jennifer Thompson, MPH Biostatistician IV Contact Information * E mail: j.thompson #64;vumc.org * Phone: 615.322.9301 * Fax: 615.343.4924 * Office ...
JeremyRoberts
* Name: Jeremy Roberts * Email: j.roberts #64;vanderbilt.edu * Phone Number: Please contact me via email. * JeremyRobertsNotifyList * MicroArrayMassSpec ...
JeremyStephens
Jeremy Stephens Senior Application Developer E mail: jeremy.stephens at vanderbilt.edu Office: (615) 322.4486 Nickname: Viking About me I graduated ...
JesseSpencerSmith19Sept2018
%HEAD{ NAME="Jesse Spencer Smith, PhD" AFFILIATION="Director of Enterprise Data ScienceIT S, HCA Healthcare" TITLE="Statistical Modeling in the Wild: Data Science ...
JiangLi
Jiang Li Bioinformatics System Egnineer I Email: jiang.river.li #64;vanderbilt.edu Phone: 615 936 7653 Vanderbilt Center for Quantitative Sciences, 2220 Pierce ...
JingHe
Jing He no longer works in the Department of Biostatistics
JoAnnAlvarez
JoAnn Alvarez, MA Biostatistician III E mail: joannmalvarez #64;gmail.com Office: 490 Preston Research Building My CV and resume (word file) Interests ...
JoanZhang
Joan Zhang M.S. Computer Systems AnalystDepartment of BiostatisticsVICC Biostatistics Shared Resources Contact Information * Phone: (615) 936 5582 ...
JoanneGoodwin
Joanne Goodwin Business Manager Email: mailto:joanne.goodwin@vanderbilt.edu Phone: 615.936.4889 Fax: 615.936.2602 Vanderbilt University School of MedicineDivision ...
JohnDCookJan19
Department of Biostatistics Seminar/Workshop Series A Whirlwind Tour of Bayesian Clinical Trial Methods John D. Cook Research Statistician, M. D. Anderson Cancer ...
JohnHarrell
John Harrell VTS E mail: john.m.harrell@vanderbilt.edu Vanderbilt UniversityDepartment of Biostatistics1161 21st Ave SouthNashville, TN 37232 615.852.7367
JonathanSchildcrout
Jonathan S. Schildcrout, Ph.D.Professor, Vice Chair of ResearchDepartment of BiostatisticsVanderbilt University Medical Center2525 West End Ave, Suite 1100Nashville ...
JoseZubizareta29Aug2018
%HEAD{ NAME="José Zubizarreta, PhD" AFFILIATION="Harvard Medical School, Harvard University" TITLE="Minimal Weights for the Design of Observational Studies and ...
JoseZubizarreta29Aug2018
1220 MRB III %HEAD{ NAME="Jose Zubizarreta, PhD, " AFFILIATION="Harvard Medical School, Harvard University" TITLE="Minimal Weights for the Design of Observational ...
JournalClubICUD
June 8, 2006. 3:00 PM in the Grand Conference Room * Two YearCognitiveOutcomesinARDS.pdf: * PostopDeliriumPredictionModel.pdf: Russ' comments about this ...
JournalClubPsychiatry
Psychiatry Journal Club: Biostatistical Viewpoints Residents Journal Club 2015 10 21 Prescription practices in the treatment of first episode schizophrenia spectrum ...
JrhRgbColorSpace
Exploring RGB Colorspace with R I've recently been exploring the DataExpo2006 data set, and it got me thinking about using color gradients in graphs. Actually, I showed ...
JulieMorathFeb16
Department of Biostatistics Seminar/Workshop Series Overview of Quality and Patient Safety at Vanderbilt Julie Morath, RN, MS Chief Quality Safety Officer, Vice ...
July142009AllDeptMtg
Good News * Icebreaker PEOPLE * Vanderbilt Valet * New employees: Meredith Blevins, Biostatistician II; Regina Smith, Administrative Assistant III; Renee ...
July2010AllDeptMtg
July 13, 2010 (MRBIII, Room 1220 2:00PM) Good News * BINGO! * Winners Marcia and Alex * Linda returning home * Cindy Chen's R21 receives a very high ...
July72008AllDeptMtg
July 7, 2008 (2:00 3:00PM/MRB III, Room 1220) Good News PEOPLE * New Faculty and Staff * Eve Anderson, Administrative Assistant II 06/09/08 * Jessica ...
JumpAutoComplete
Topic Jump Auto Completion The topic jump field in the top right corner now autocompletes topic names! If you know part of a topic name but not all of it, you can ...
JunkMail
Main.JoAnnAlvarez 19 Aug 2010 First steps Register with the Direct Marketing Association's opt out service. Register with the credit reporting agencies to opt out ...
KCriminMay09
Department of Biostatistics Seminar/Workshop Series Multivariate Reference Regions for ECG Parameters Kimberly Crimin, PhD Senior Principal Biostatistician II Wyeth ...
KarelGMMoons
Karel G M Moons, M.D., Ph.D. Professor of Biostatistics E mail: k.g.m.moons@umcutrecht.nl Website: University Medical Center Utrecht University Medical Center ...
KarenBandeen-Roche10April2019
%HEAD{ NAME="Karen Bandeen Roche, PhD" AFFILIATION="Frank Hurley and Catharine Dorrier Professor and Chair Department of Biostatistics, Johns Hopkins Bloomberg ...
KateSasHighlighter
Syntax Highlighting for SAS in the KDE Kate Editor A big thanks to Ian M. Shmutte from Cornell Institute for Social and Economic Research for his updates to the sas ...
Kde4AndProgrammingTips
Linux Workshop: KDE 4 and Programming Tips February 25, 2009 KDE 4 Terminology * Linux distribution a suite of packaged together software that is designed to ...
KeavenAnderson7Nov2018
%HEAD{ NAME="Keaven Anderson, PhD" AFFILIATION=" Distinguished Scientist Biostatistics and Research Decision Sciences Merck" TITLE="Challenges with Design ...
KirkLaneFeb2
Department of Biostatistics Seminar/Workshop Series The Co Evolution of Genetics and Biostatistics Kirk Lane, PhD Research Assistant Professor Med, Allergy/Pulmonary ...
Klee
Materials for Kerry Lee Important Components of ASA Nomination Guidelines for Letters of Support Full ASA Guidelines * Letters of support are generally the most ...
KnitrHtmlTemplate
knitr HTML Template Example html Document Reproducible Research Using knitr in conjunction with Rmarkdown and RStudio one can produce nice html reports and material ...
KonqCervisiaCvs
A Quick Howto for Konqueror/Cervisia/CVS This brief tutoiral will teach you how to check out the rreport module from the Biostat server. You must have installed Cervisia ...
KonqCervisiaCvsImport
Importing New Modules into CVS with Cervisia In CVS, a module is nothing more than a folder and all files and folders underneath. This tutorial will describe how to ...
KristenKotter
Kristen Kotter no longer works in the Department of Biostatistics
LXuFarewell
Lei Xu's Farewell Luncheon, November 11, 2010 /2010LXuFarewell1.JPG /2010LXuFarewell2.JPG /2010LXuFarewell3.JPG /2010LXuFarewell4.JPG
LaTeXCollab
Help for Collaborators for Editing Reproducible LaTeX / knitr Documents Collaborative Editors Workflows Requirements NOTE: More up to date information may be ...
LaTeXExamples
Miscellaneous LaTeX Examples and Templates Template for a Report or Grant Application Section %Usage: pdflatex myfile % \documentclass{article} \usepackage superscript ...
LacticAcidosis2011
R Code for the Analysis of Lactic Acidosis * codeToPublish.R ____________________ Main.SvetlanaEden 17 Jan 2011
LatexGraphLayout
Using LaTeX or Image Manipulation Software to Produce Posters and Other Graphics Layouts Flexible Graphics Layouts in LaTeX Graphics Inclusion Guide Using minipage ...
LaurieSamuels
Lauren (Laurie) Samuels, PhD Research Assistant Professor Office: 2525 West End Avenue, #1135 (inside suite 1130) Email: lauren.samuels@vanderbilt.edu Phone: 615 ...
LayoutFnExample
Using the layout() function to generate multiple plots The par() function's mfrow= argument is often used to generate multiple plots on one page. However, as you ...
LeenaChoi
Leena Choi, PhD Professor of Biostatistics Vice Chair for Diversity and Inclusion E mail: leena.choi@vanderbilt.edu Phone: 615.343.3497 Fax: 615.343.4924 Office ...
LeenaRNotes
R Notes for Classes Some of R codes for classes are listed where EMS refers to Essential Medical Statistics. EMS Chapter 3 Displaying the data Shapes of frequency ...
LeenaStataNotes
Stata Notes for Classes * Some of STATA codes for classes are listed. * EMS refers to Essential Medical Statistics. * Some of materials were copied/modified ...
LeiXu
* Name: Lei Xu * Email: lei.xu #64;vanderbilt.edu * Phone Number: 615 343 6718 * Biosketch: Collaboration * Vanderbilt University Institute of Imaging ...
LengthOfTheBeatlesSongs
R code for the Length of the Beatles Songs poster Have all three files in the same folder and run 'beatlesongs2012.R' to get BeatlesongsPoster2012.pdf. * Data ...
LiWang
Li Wang Biostatistician III E mail: li.wang@vanderbilt.edu Phone: 615.343.8654 Fax: 615.343.4924 Office: 11138 H Vanderbilt University School of MedicineDepartment ...
LilyWang
Lily Wang Associate Professor of Biostatistics Department of BiostatisticsVanderbilt University School of Medicine2525 West End, Ste. 11000Nashville, TN 37203 lily ...
LindaStewart
Linda Stewart, MBA, MA Department Administrator Email: linda.stewart@vanderbilt.edu Phone: 615.936.1009 Fax: 615.343.4924Vanderbilt University School of MedicineDepartment ...
LinuxAndSecurity
Linux Workshop: General Linux Information and Security Tips March 26, 2008 Linux Information Links for Further Reading * Linux.com and Linux.org. * Linux Today ...
LinuxGraphicsSeminar
Common Graphics Utilities for Linux ImageMagick Online Documentation: http://www.imagemagick.org/script/command line tools.php How to downsize a whole directory ...
LinuxWorkshops
Linux Workshops NOTE The Linux Workshops are no longer being presented. This page is being retained so that we can remember the links to the materials used in previous ...
LisaKaltenbach
Lisa Kaltenbach, MS lisa.kaltenbach@vanderbilt.edu * CV.pdf: My CV * metalica.dta: Metalica Dataset
LittleR
littler Project littler is a command line UNIX program that provides hash bang (#!) capability for the R Project. Latest Release Source: littler 0.1.1.tar.gz MD5 ...
LynneBerry
* Name: Lynne Berry * Email: lynne.d.berry #64;vanderbilt.edu * Phone Number: 936 2502
MCBSPharmacoepi
Pharmacoepidemiology in Masters of Clinical Biomedical Science Program * Instructor: Patrick G. Arbogast, Ph.D * E mail: patrick.arbogast #64;vanderbilt.edu ...
MCannonDec1
Department of Biostatistics Seminar/Workshop Series Actionable Feedback: Crafting Feedback that Facilitates Learning and Appropriate Behavioral Change Mark D. Cannon ...
MPHBiostatIyear2006
Biostatistics I Year 2006 * Instructor: * Date: * Time: * Class Room: Materials for Regular Lectures * Syllabus: * Data sets * Lecture ...
MSJournalClub
Main.LiWang 06 Dec 2011 Biostatistics MS journal club (2nd Thursday each month, topics may vary) Date Title/Topic Journal Faculty leading the discussion ...
MTianZeng3Oct2018
Distance measures have been used as natural measures of (dis)similarity and served as the foundation of various learning methods. The efficiency of distance based ...
MaMsAdditionalTools
Additional Tools * InfoLog.exe: Info Score generator * WGALog.exe: WGA Score generator * sam2003 07 07_v1.21.zip: SAM excel score generator * msjavx86 ...
MacBackup
Backup for Macintosh Computers Links Mac OS X: Automatically connect to a network drive when your computer starts up or wakes from sleep http://www.makeuseof.com ...
MacPrintersCommandLine
Installing Macintosh Printers using the Command Line Note this is specific to the HP Color LaserJet M651 printers in the Department of Biostatistics. Click here ...
MainMcbsILecturenotes
Main.AyumiShintani 06 Jul 2009
ManuscriptPolicies
Biostatistics Authorship Policy Collaborating statisticians qualify for authorship on manuscripts and abstracts by meeting the criteria set forth below, which is derived ...
MarioDavidson
Mario Davidson, PhD Assistant Professor E mail: mario.davidson@vanderbilt.edu Phone: (615) 343 2272 Fax: (615) 343 4924 Vanderbilt University Department of Biostatistics ...
MaryDietrich
Mary S. Dietrich, Ph.D., M.S. Professor, Statistics Measurement E mail: mary.dietrich #64;vanderbilt.edu Website: Vanderbilt Faculty Profile Vanderbilt University ...
MatchedRandomization
Reweighted Mahalanobis Distance Matching in Observational Studies and Randomized Trials Matched Randomization R Package nbpMatching The current version of the R package ...
MatchingExamples
Examples Page for the Matching and Mahalanobis Distance Matrix Web Apps Cole Beck and Robert Greevy are currently using this page to log their test examples ...
MatchingTripletsPriorToRandomization
nbpMatching Demo: Triplet Matching Prior to Randomization The following tutorial shows the R code to create matched triplets prior to randomizing in a three arm trial ...
MatchingWithMissingData
Using the fill.missing() function The function fill.missing() is automatically called by gendistance(), so the user will often be able to skip calling it directly ...
MattShotwell
Curriculum vitae, last updated 2021 01 25: MShotwellCV.pdf Optimal design for a challenge response experiment. Right click the graphic below to 'view image' or 'open ...
McGowanLD
Lucy D'Agostino McGowan Biostatistics PhD Student “There are those wholook at things the way they areand ask why…I dream of thingsthat never were, and ask why not ...
Mcbs2Final2007
Material for Final Exam
McbsBiostat12006
Biostatistics I Year 2007 * Instructor: Ayumi Shintani, Ph.D, MPH, Office S 2323 MCN, Phone: (615) 936 1954, E mail: Ayumi.shintani #64;mcmail.vanderbilt.edu ...
McbsBiostat12009
Biostatistics I Year 2009 * Instructor: Ayumi Shintani, Ph.D, MPH, Office S 2323 MCN, Phone: (615) 936 1954, E mail: Ayumi.shintani #64;mcmail.vanderbilt.edu ...
McbsIDataSets
Main.AyumiShintani 08 Jul 2009
MeasureChange
How Should Change be Measured? Newer Material, Section 14.4 * Analysis of Paired Observations * Frequently one makes multiple observations on same experimental ...
MeharryPreterm
Pre Term Disparities and Intervention Grant Team Valerie Montgomery Rice MD Chair, Ob/Gyn, Meharry Rani Lewis MD OB GYN, Meharry Pat Temple MD Pediatrics, VU ...
MengXu
Meng Xu, M.S. Biostatistician III E mail: meng.xu@vanderbilt.edu Phone: 615 936 6974 Vanderbilt University School of MedicineDepartment of Biostatistics2525 West ...
MeridithBlevins
Meridith Blevins Peratikos Adjunct Assistant in Biostatistics Biostatistical Specialist at 3M E mail: mperatikos@mmm.com Phone: 937.572.7674 Vanderbilt University ...
MichaelMatheny
Michael Matheny, MD, MS, MPH Assistant Professor of Biostatistics E mail: michael.matheny@Vanderbilt.edu Website: VU SOM, Department of Medicine Vanderbilt University ...
MicroArrayMassSpec
Micro Array and Mass Spec Home Investigator Projects Create Study Name Primary Investigator Primary Contact Primary Contact Email ...
MinchunZhou
Minchun Zhou Ph.D Candidate Vanderbilt University CV CV_Minchun Contact E mail: Minchun.zhou #64;vanderbilt.edu Website: www.MinchunZhou.com ...
MingLi
Ming Li, Ph.D. Research Associate Professor Department of Biostatistics Cancer Biostatistics Division Contact Information * E mail: ming.li #64;vanderbilt ...
MingshengGuo
* Name: mingsheng guo * Email: mingsheng.guo #64;vanderbilt.edu * Phone Number: 936 7653 * Comment: Personal Preferences (details in .TWikiVariables) ...
MingshengMikeGuo
Mingsheng (Mike) Guo Bioinformaticist VICC Cancer Biostatistics Division, Department of Biostatistics, School of Medicine, Vanderbilt University Email: mingsheng ...
ModdingMozilla
Linux Workshop Modding Mozilla Themes extensions can enhance Firefox and Thunderbird June 29, 2005 * The web site for Firefox and Thunderbird extensions is ...
MollyOlson
function hidedisplay(elementClass){ var x = document.getElementsByClassName(elementClass); for (i = 0; i /* Change font on whole page*/ html body { font family:Roboto ...
MonthlyBizTeamMeetings
Bi Monthly Admin Team Meetings Template 2012 2012 Meetings 2012 Meeting Leader Schedule 2011 2011 Meetings 2010 2010 Meetings 2009 2009 Meetings 2008 2008 Meetings ...
MorbidityDissimilarityIndex
Main.JonathanSchildcrout 10 Mar 2011 Morbidity Dissimiliarity Index Function This function can be used to calculated the morbidity dissimilarity index descrbed in ...
MozambiqueLTFU
Impact of definitions of loss to follow up on estimates of retention, mortality, and disease progression: Application to an HIV program in Mozambique Status: Published ...
MsStaffRetreat2011
http://biostat.mc.vanderbilt.edu/wiki/pub/Main/MsStaffRetreat2011/DSC_2660.JPG http://biostat.mc.vanderbilt.edu/wiki/pub/Main/MsStaffRetreat2011/IMG_6308.JPG ...
MsciBiostatIGuest
Biostatistics I Year 2005 (Guest Lectures) * Instructor: Ayumi Shintani, Ph.D, MPH, Office S 2323 MCN, Phone: (615) 936 1954, E mail: Ayumi.shintani #64;mcmail ...
MsciBiostatII
.foswikiTopic { max width: 650px; } MSCI Biostatistics II February 2021 Key Persons Name Contact Zulip Instructors: Frank E. Harrell, Jr. f.harrell ...
MsciBiostatIIAssignments
GRADES #instructions{ max width: 500px; margin: auto; padding top: .5ex; padding bottom: 1ex; padding left: 1em; } #overview{ max width: 500px ...
MsciBiostatIISchedule
MSCI Biostatistics II Course Schedule February 2022 ul{ margin: 0; } Key: A = Whitlock and Schluter (text) B = Biostatistics for Biomedical Research (handout) ...
MsciCourseSyllabus
MSCI Biostatistics II Syllabus
MsciCourseSyllabus1
Syllabus * Syllabus2005BiostatisticsIinMSCIProgram.doc:
MsciCourseSyllabus2006
MSCI Biostatistics II Year 2006 Syllabus SyllabusforMSCIBiostatisticsII2006.doc
MsciEpiI
EPIDEMIOLOGY I Year 2010 Master of Science in Clinical Investigation Program * Instructors: Drs. Karel G.M. Moons, Linda Peelen * Date: September 13 to 24 ...
MultipleKMCurves
Plot the Kaplan Meier (K M) curves from two different K M calculations on the same plot The motivating data set for this example is the Rtestdata.sav SPSS data set ...
MySQL
http://www.mysql.com/
N2qodIT
IT notes related to the N2QOD project Steps to produce the N2QOD reports (as of October 1, 2019) Log on to my account on biostat059.dhcp.mc.vanderbilt.edu Set default ...
NamePronunciation
Main.JoAnnAlvarez 15 Nov 2012 Sometimes we struggle to pronounce our colleagues' names. Many of the people in our department come from China, where tonal languages ...
NateMercaldo
About I am currently a PhD student in the Department of Biostatistics at Vanderbilt University. (NMToDo) Software * Marginalized Models for Longitudinal Binary Data ...
NbsPages
Nashville Breast StudiesVanderbilt University School of MedicineDepartment of BiostatisticsS 2323 Medical Center NorthNashville, TN 37232 2158(615) 322 2001(800) 242 ...
NeuReport
Grant Proposals 1 Dr Lori Jordan (11/14) Ischemic Brian Injury and Cognitive Impairment in Adolescents and Young Adults with Congenital Heart Disease 1 Dr Kanika ...
NeurosurgeryQualityOutcomesReport
National Neurosurgery Quality and Outcomes Database Outcomes Modeling Meeting Aug 21, 2012 Endpoints * Outcomes * VAS Back Pain, VAS Leg Pain * ODI ...
NhanesGh
Body Size, Glycohemoglobin, and Demographics from NHANES 2009 2010 National Health and Nutrition Examination Survey * http://www.cdc.gov/nchs/nhanes/nhanes2009 ...
NicholasMancuso14Nov2018
%HEAD{ NAME="Nicholas Mancuso, PhD" AFFILIATION=" Postdoctoral fellow Department of Pathology and Laboratory Medicine Geffen School of Medicine ...
NimishGautam
* Name: Nimish Gautam * Email: nimish.gautam #64;vanderbilt.edu * Phone Number: * Comment: Personal Preferences (details in .TWikiVariables) * Horizontal ...
NomogramNet
Nomogram.net Nomogram.net is a web application that creates interactive nomograms. Main.JeremyStephens 26 May 2010
NonbipartiteMatching
Nonbipartite Matching Web Application A web application to perform nonbipartite matching is found at http://data.vanderbilt.edu/rapache/matching . The webapp implements ...
NuHire
New Staff Orientation (Reference Guide) If you are funded by Federal projects, it is very important for you to complete on line effort reporting and certification ...
NumericFactorLevels
Coding factors with numerical levels instead of character ones Problem: Often times, the categorical variables in our read in data set have character denoted levels ...
OCRE
Optimal Design of Challenge Response Experiments in Cardiac Electrophysiology (OCRE; NIH/NHLBI 1R01HL118392) Table of Contents Project Summary Meetings are held ...
ODSandLDA
Outcome Dependent Sampling for Longitudinal Data Analysis: Publications and Software This page provides references to papers and links to software associated with ...
ObGynReport
Summary of OB/GYN Department Projects * Last update: 3/7/2012 The following provides a summary of current and completed OB/GYN research projects. For every project ...
October2009AllDeptMtg
Good News * Icebreaker * 2009 Staff/Faculty Community Survey PEOPLE * Service Awards * Recognition and Reward recipients * Promotions: Lisa Kaltenbach ...
October62008AllDeptMtg
October 6, 2008 (2:00 3:00PM/MRB III, Room 1220) Good News Special Presentations * Vanderbilt Community Giving Campaign * Representatives from the VUMC ...
Ocu20202021
#22823; #38442; #24066; #31435; #22823; #23398; #12463; #12522; #12491; #12459; #12523; #12488; #12521; #12452; #12450; #12523; 2021 11 10 ~ 2021 11 18 9:00 10 ...
OddDateManipulation
Converting dates of the form 'mddyy', 'mddyyyy', 'mmddyy', or 'mmddyyyy' to the form 'YYYY MM DD' Problem: A data file contains multiple date columns, whose format ...
OmicsClinicAnalyses
Omics Data Clinic Notes and Analyses 23 August, 2022 Melissa Kimlinger (Josh Billings), Anesthesiology My mentor and I have data from bulk RNA seq in mouse kidneys ...
OrdinalRegression
COBOT: Conditional Ordinal By Ordinal Test URL of this page: http://biostat.mc.vanderbilt.edu/OrdinalRegression We developed a method for testing for association ...
OrgChart
Organizational Chart digraph orgchart { size="15,15"; nodesep=1; node shape=box, style=filled, width=3.60, color=black, fillcolor=gray ; "Division of Cancer ...
OsakaUnivSummer2015
Clinical trials (Summer 2015). Osaka University Biostatistics * #23567; #23665; #36948; #27193; * Department of Biostatistics and Center for Quantitative ...
OtherSupport
Other Support How The Process Works * As coordinator * Audrey will forward OS request to the employee designated in the attached document with a cc to ...
OurPeople
Our People Faculty (Full and Associate Professors) %Main.PhotoList.YUSHYRINFO% %Main.PhotoList.FRANKHARRELLINFO% %Main.PhotoList.WILLIAMDUPONTINFO% %Main ...
OutlookSecondAccountHowTo
How to add a second account using the Microsoft Outlook email desktop application * Open the Outlook desktop application. Click on the File menu. * Click ...
PWestgateJan25
Department of Biostatistics Seminar/Workshop Series Improving Small Sample Inference in Group Randomized Trials with Binary Outcomes Philip Westgate, PhD Graduate ...
PeggyDuthie20220223
%HEAD{ NAME="Peg Duthie (she/her)" AFFILIATION="Communications Manager Department of Biostatistics Vanderbilt University Medical Center" TITLE="Drawing Attention ...
PeggySchuyler
* Name: Peggy Schuyler * Email: peggy.schuyler #64;vanderbilt.edu * Phone Number: 3 4094 * Comment:
Pei-FangSu
Pei Fang Su Ph.D. Research Fellow547 Preston Bldg., Nashville, TN 37232 6848 E mail: pei fang.su #64;vanderbilt.edu Phone: 615.936.303 Fax: 615.936.2602
PengchengLu
Pengcheng Lu, M.S. Biostatistician III Contact Information Center for Quantitative Sciences and Department of BiostatisticsVanderbilt University School of Medicine2220 ...
PhaserNotes
Notes for Xerox Phaser printers See http://biostat.mc.vanderbilt.edu/wiki/Main/UbuntuSetup#Printers for printer setup instructions. Adjusting the Color Registration ...
PhotoGalleryParties
Department of Biostatistics Parties
PhotoList
This is where you add new variables for USER_INFO Please attach images to OurPeople with the name "FirstLast.JPG" * Set FRANKHARRELLINFO = Frank Harrell, Ph.D. ...
Pictures
* Emily at 10 months * Arches * Bird * Carribean * Kauai1 * Kauai2 * Kauai3 * Tulum * Watch
PidginLyncXmpp
Using the Pidgin Instant Messaging Client with Lync By now everyone should have their new Polycom CX600 phones installed. When the phones were installed, each department ...
PidginSetup
Pidgin Instant Messaging Client Setup Jabber is an instant messaging protocol (like AIM) that has been installed on the Biostat server for use throughout the department ...
PillCvdForms
This is a page for forms. 1 Mini Cog_noinstructions.pdf: Mini Cog, final version 1 ScreeningLog.pdf: 1 Morisky_noinstructions.pdf:
PingshengWu
Pingsheng Wu, PhD, MS Research Associate Professor of Medicine Biostatistics Email: pingsheng.wu@vanderbilt.eduPhone: (615) 322 2001Fax: (615) 343 4924Office: 2525 ...
PlayOnMacInstructions
Install PlayOnMac and Power and Sample Size program on Macintosh * Download PlayOnMac (the file is PlayOnMac_4.2.6.dmg as of 19 Feb 2015) * Double click on the ...
PotluckApril2007
Biostatistics Potluck Party: Celebrating Patrick's Promotion Monday, April 30 at 5:00 PM; Frank's place General Rules * All department members, significant others ...
PowerSampleSize
var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www."); document.write(unescape("%3Cscript src='" gaJsHost "google analytics ...
PraiValidation
Main.JoAnnAlvarez 04 Apr 2013 PRAI Validation Meeting notes 2013 June 14 * Liana is concerned with the association test on ECOG. It has a low estimated Spearman ...
PratikAnemia
Anesthesiology Collaboration Project Pratik Pandharipande Background Information * PI: Pratik Pandharipande * Title: Anemia and outcomes Project History ...
PredictingInpatientDeterioration:FromQualityImprovementToResearch
%HEAD{ NAME="Benjamin Goldstein, PhD" AFFILIATION="Duke University" TITLE="Predicting Inpatient Deterioration: From Quality Improvement to Research (A story in ...
PreparationStage
Literatures * Two step Calibration method for MALDI TOF MS... * Improved Calibration of TOF MS by Simplex Optimization... * Mass Calibration Problems ...
PrereqComp
Computing Background Information and Prerequisites * Computers and Computer Languages Main.FrankHarrell 01 Feb 2004
PrespecificStrategy
Considerations in Planning Analysis Strategy Preparing a detailed analysis plan is important in having quality, reproducible research. This page outlines strategies ...
PrintingGaimCQI
Outline for Linux Workshop Wednesday 22 March, 2006, 2:00 P.M., D 2221 MCN Printing * Servers * CUPS (common unix printing system) * Xprt (Xprint ...
ProgrammingTipsForStatisticians
Programming Tips For Statisticians Programming is a huge part of what modern statisticians do, yet few of us ever take time to study good programming practices. Some ...
ProjectsforStudents
Student Worker Projects We appreciate the opportunity to work with VU students through the Federal Work Study (FWS) program. We request that you (student employee ...
ProtectingYourData
Protecting Your Data Introduction Certain kinds of information should be kept private. It is the responsibility of those of us who deal with this information to understand ...
ProvidenceStudy
Main.JoAnnAlvarez 13 Nov 2009 Providence ResearchQuestions_Updated120709.pdf Research Questions CFITAnalysisplan_BS_112509.pdf Meetings 2009 Dec 22 Present: JoAnn ...
PsFrag
psfrag: Inserting LaTeX Code Inside Graphics There are many approaches for inserting LaTeX equations, symbols, tables, and other output inside postscript and pdf graphics ...
PtsdExample
Why you can't trust randomization: the importance of restricted randomization in RCTs. Robert Greevy, PhD Please Download the Following The dataset of examiners that ...
PublicationICUD
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PumedtoCv
From pubmed to your cv: Creating a list of your publication Steps 1 Go to https://www.ncbi.nlm.nih.gov/pubmed/ and download a list as a text file (MEDLINE format ...
Puzzler1
Binary Response, Three Potential Predictors, Independent Observations In a hypothetical study, a sample of 500 subjects had three potential predictors measured: age ...
QcDeterminant
Determinant of a matrix Determinants palys an important role in finding the inverse of a square matrix and also in solving systems of linear equations. Determinant ...
QiLiu
Qi Liu, Ph.D. Associate Professor of Bioinformatics Technical Director of VANGARD E mail: qi.liu #64;vanderbilt.edu; qi.liu #64;vumc.org Phone: 615.322.6618 Fax ...
QingxiaChen
Qingxia (Cindy) Chen, PhD Professor and Vice Chair for Education, Department of Biostatistics Biomedical Informatics, and Ophthalmology Visual Sciences E ...
RApacheProject
The R/Apache Integration Project This is the old site. Click here for the New Site! Presented at the Directions in Statistical Computing Conference DSC2005 paper ...
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How to write your own functions and good R programing techniques Good R Programing Techniques R is quite different from regular programing languages in the way that ...
RConfiguration
Configuring R Using html Help Facility Linux users of R version 2.10 and later may want to take advantage of the new dynamic html rendering of help pages. The konqueror ...
RInternals
R Internals This page is about how R stores objects internally. I've had to re figure this out several times, so I thought a TWiki page about this might be prudent ...
RMSscRatings
June 4 6 2001 1=disagree 5=agree * The course met the objectives advertised on Insightful's websight and flyers * 5: 5/9 4: 4/9 * has provided me with ...
RMySQL
RMySQL RMySQL is a database interface and MySQL driver for R. This version complies with the database interface definition as implemented in the package DBI 0.2 2 ...
ROsterMar09
Department of Biostatistics Seminar/Workshop Series The Role of Education in Biostatistical Consulting with Medical and Health Science Researchers Robert A. Oster ...
RPackageDevelopmentWithGitHub
Department of Biostatistics Seminar/Workshop Series R Package Development with GitHub Cole Beck, B.S. Computer Systems Analyst, Department of Biostatistics The ...
RS
R Packages, Functions, and Documentation * R home R reference card R Programming Help files with output R Tutorials Videos R site search R seek ...
RSDBdevServInst
RSDB Development Server Installation BIOSTAT300 160.129.129.204 Linux 2.4.27 2 386 MemTotal 516368 kB model name AMD Athlon(tm) XP 2800 cpu MHz 2088.081 ...
RVim
R and VIM Syntax Highlighting and Indenting I modified the existing R vim syntax file, and created a vim R indent file since R's indention in vim was broken. Below ...
RafeDonahue
Rafe Michael Joseph Donahue, PhD Adjunct Associate Professor Department of Biostatistics E mail: rafe.donahue@vanderbilt.edu Bivariate Baseball Score Plots ...
RailsNotes
Quick/Easy Startup Notes for Ruby on Rails SSH to the Development Server and run the commands below to create a brand new Rails project. Create the rails project: ...
RameelaChandrasekhar
Rameela Raman, M.A., Ph.D. Associate Professor Office: 2525 West End Avenue, Suite 11000, Nashville, TN 37203 1738 Phone: 615.322.7365 Fax: 615.343.4924 Email ...
RameelaRaman
Rameela Raman, M.A., Ph.D. Associate Professor Office: 2525 West End Avenue, Suite 11000, Nashville, TN 37203 1738 Phone: 615.322.7365 Fax: 615.343.4924 Email ...
RanTao
Ran Tao, PhD Assistant Professor E mail: r DOT tao AT vanderbilt DOT edu Phone: (615) 322 1081 Fax: (615) 343 4924 Office: 2525 West End Ave, Room 11118A ...
RankBasedGBH
Files used in the Lu X, Mehrotra DV, and Shepherd BE. 'Rank based principal stratum sensitivity analyses.' Functions: funcsRankGBH.r Simulation Code: Simulation ...
RapacheWebServicesReport
Using Rapache for Web Services R is fast becoming the language of choice for statistical computing, and researchers are quickly transferring their cutting edge research ...
RdmGroup
Vanderbilt Research Data Management Discussion Group Goals To evaluate data entry and management tools that could be useful for internal clinical trials, multi center ...
RebeccaHubbard29May2019
%HEAD{ NAME="Rebecca Hubbard, PhD" AFFILIATION="University of Pennsylvania, Perelman School of Medicine" TITLE="A Statistical Perspective on Challenges and Opportunities ...
RecognizeAndReward
Meeting Agendas * MeetingAgenda121907.odt: Biostatistics Recognize and Reward site
RecognizeReward
Recognition and Rewards Program (R R) What is it? Vanderbilt Medical Center has established the Recognition and Reward Program in order to recognize the difference ...
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Recommended Reading In Reverse Chronological Order by Date of Publication Authors Title Journal Issue Page Comments Jones RH Bayesian information ...
ReduceAnalysisFunctions
R Functions for Competing Risk Analysis and Stratified Analysis in Reduce Stratified logrank Test library(survival) f Cumulative Incidence Function Plots for Competing ...
ReginaSmith
Regina Smith Administrative Assistant III Email: regina.l.smith #64;vanderbilt.edu Phone: 615.936.3995Fax: 615.936.2602 Vanderbilt University School of MedicineDivision ...
RegularExpressionPrimer
Regular Expression Primer Regular expressions are a way to describe patterns in text. You can use them to search, replace, and extract information from character data ...
RelativeToAbsoluteRisks
ABSRISK: Absolute Relative Risk by William D. Dupont and Walton D. Plummer, Jr. absrisk.exe is a program for estimating absolute risks from relative risks. This ...
Renv
Renv Renv (pronounced "arr env") is a tool for installing multiple versions of R alongside each other. Why it exists A new version of R is released every few months ...
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Reproducible Research Tutorial Introduction Reproducible research (RR) is the practice of conducting and presenting research in such a way that others, and yourself ...
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Research Data Management * On Designing a Web Based Clinical Research Data Management System. Seminar presented to the Dept. of Health Evaluation Sciences Research ...
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Research Database Goals The research database discussion group topic is the parent of this topic. Server Installation * RSDBdevServInst * Our Development Page ...
RetreatICUD
May 18 * Click here for agenda: Minutes: * Set GROUP = FrankHarrell, AyumiShintani, JenniferThompson, BrendaPun * Set ALLOWTOPICCHANGE = FrankHarrell ...
ReviewBakris04
Review of Bakris et al, Kidney International 2004 65:1991 2002 Biostatistical Reviewier: FrankHarrell This is a meta analysis of randomized clinical trials with at ...
ReviewTepel04
Review of Tepel et al, NEJM 2000;343:180 4 Biostatistical Reviewer: FrankHarrell This paper demonstrates that even in a premier journal, statistical reviews are frequently ...
Rhubarb
Rhubarb Rhubarb is a Ruby on Rails application we're working on that is designed to be a data capture tool for the web. Below is a short explanation about how things ...
RhubarbYAML
Rhubarb YAML Specification This page details the YAML specification intended for use with Rhubarb as a way to specify CRF format. 1.0 (stable) Dictionary The ...
RichardUrbanoDateProblem
Converting dates of the form 'mddyy' or 'mddyyyy' or 'mmddyy' or 'mmddyyyy' to the form 'YYYY MM DD' Theresa A Scott, M.S. Biostatistician II, Department of Biostatistics ...
RicohMPC4503forLinux
Ricoh MP C4503 installation for Linux These commands will download and install a printer driver for the Ricoh MP C4503 printer/copier/fax/scan device. We call this ...
RmS
*NOTE*: This page has been replaced by more up to date material at https://hbiostat.org/rms REGRESSION MODELING STRATEGIES Semester Course Short Course Software ...
RmSDirectionsandMap
Directions to the Student Life Center Building Tour: Board of Trust Room Visitor Parking Map * Note: The red areas on this map indicate Visitor Parking
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Archive from the 2 4 June 2003 Regression Modeling Strategies Short Courses * Final S Plus script * Corrected final S Plus script Main.FrankHarrell 01 Feb ...
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Regression Modeling Strategies Discussion Board * Questions about assignments * General modeling issues * Binary logistic regression: archive and board ...
RobertGreevy
Robert Alan Greevy, Jr, PhD Associate Professor of Biostatistics Director, Biostatistics Graduate Studies Director, Health Services Research Biostatistics Office ...
RothmaExtended
Anesthesiology Collaboration Project Rothma, Brain Background Information * PI: Rothma, Brain * Date: 02/20/2013 * Title: PAF vs GasChart End Times for ...
Rreport
rreport Package rreport is an R package that produces statistical reports in LaTeX for clinical trials. It is especially useful for producing interim reports for ...
Rrms
The rms Package for R : Regression Modeling Strategies Go to https://hbiostat.org/R/rms Book
RunFan
function hidedisplay(elementClass){ var x = document.getElementsByClassName(elementClass); for (i = 0; i // Run Fan, Ph.D., M.S. 2220 Pierce Avenue Preston Research ...
SMUG
SMUG: Somatic MUtation Gleaner URL of this page: http://biostat.mc.vanderbilt.edu/SMUG Program: SMUG.tgz. To uncompress, type tar zxf SMUG.tgz. Introduction Somatic ...
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Comparison of cost efficiency of SNP chips Li C, Li M, Long J R, Cai Q, Zheng W (2008) Evaluating cost efficiency of SNP chips in genome wide association studies. ...
SNPChipCoverage
Coverage maps of SNP chips and their coverage variation across genome Genome wide association (GWA) studies rely on commercial SNP genotyping panels, for which a common ...
SN_Communication
Department of Biostatistics Feedback and Communication Survey To assess the amount of feedback and communication one is receiving from their supervisor, a survey was ...
STBRsylConcepts
Section 1: Introduction to Statistical Concepts Instructor: Frank Harrell Statistical inference is the process of drawing general conclusions from specific studies ...
STBRsylDesign
Section 4: Experimental Design and Analyzing Serial Measurements Instructor: This section introduces the principles of experimental design as applied to biomedical ...
STBRsylEffectEvidence
Section 5: Measuring Effects and Quantifying Evidence in Biomedical Research Instructor: This section introduces commonly used measures of frequency and effect in ...
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Section 2: Tools for Formal Statistical Inference Instructor: Tatsuki Koyama The statistical inferences needed to answer many of the scientific questions addressed ...
STBRsylModels
Section 3: Statistical Modeling Instructor: Lily Wang In many studies, multivariable statistical models are used to estimate an effect after controlling for a number ...
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Anesthesiology Collaboration Project Nahel Saied Background Information * PI: Nahel Saied * Title: Regional vs General anesthesia Project History (Chronological ...
SampleSeq
Subject selection for DNA sequencing experiments URL of this page: http://biostat.mc.vanderbilt.edu/SampleSeq SampleSeq: for targeted sequencing studies Program: ...
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Files from Preventing Future Headaches: Reproducible Research Using Stata (Center for Health Services Research, 26 May 2020) (Lauren Samuels) To run the .txt files ...
SandeepParvathapuram
Welcome * Name: Sandeep Parvathapuram * Email: sandeep.parvathapuram #64;vanderbilt.edu * Phone Number at MCN: 615 343 3556 Career Interests * Data Mining ...
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Sarah A. Fletcher, BA Biostatistician I E mail: sarah.fletcher@vanderbilt.edu Phone: 615.936.0328 Office: MCN D 2220 Medical Center North (MCN) Vanderbilt ...
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%HEAD{ NAME="Sarah Lotspeich, PhD" AFFILIATION="Vanderbilt University School of Medicine" TITLE="Robust odds ratio estimation using error prone data: correcting ...
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SAS Macros for Assisting with Survival and Risk Analysis, and Some SAS Procedures Useful for Multivariable Modeling Several unsupported SAS macros written by Harrell ...
SasVumc
SAS at VUMC At VUMC, the SAS suite is delivered to users using a central server. Licenses to run SAS installed on individual workstations are not available for a ...
SccAnalyses
SCC Analyses Email, digital folders, and physical folders have proven to be an inefficient long term solution for managing multiple analysis results for many datasets ...
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Sebastien JPA Haneuse, Ph.D. Assistant Professor CV (as of 05/01/2005) PDF Microsoft Word E mail: sebastien.haneuse ...
Seminars
#table1 {font family:"Trebuchet MS", Arial, Helvetica, sans serif; width:100%; border collapse:collapse;} #table1 td, #table1 th{ text align:center; width:16.6666 ...
ServicesOverview
Biostatistical Services Presentation The main goal of the Department of Biostatistics is to increase the quality and quantity of research in the School of Medicine ...
Set-basedInferenceForIntegrativeAnalysisOfGeneticCompendiums
%HEAD{ NAME="Ryan Sun, PhD" AFFILIATION="Harvard University" TITLE="Set based inference for integrative analysis of genetic compendiums" IMAGELINK="http://biostat ...
SharonPhillips
Sharon Phillips, MSPH Associate in Biostatistics E mail: sharon.phillips #64;vanderbilt.edu Phone: (615) 343 1153 Fax: (615) 936 2602 Office: Preston Bldg 549 ...
ShawnGarbett
Shawn Garbett Assistant Faculty E mail: shawn.garbett at vumc.org Office: (615) 875 7481 Nickname: Garp About Me I graduated from Penn State in August ...
ShepherdCausalInference
Some of My Causal Inference Papers Shepherd BE, Gilbert PB, Jemiai Y, Rotnitzky A (2006). Sensitivity analyses comparing outcomes only existing in a subset selected ...
ShepherdDataAudits
Methods for Data Audits and Measurement Error I do a lot of research with observational HIV databases, where we are doing analyses with secondary use data (e.g., electronic ...
ShepherdOrdinal
Ordinal Methods Motivated by a simple question we encountered in our collaborative research, Chun Li and I developed a new statistical method to test for association ...
ShepherdOtherPapers
Some Other Papers Shepherd BE (2008). The cost of checking proportional hazards. Statistics in Medicine 27: 1248 1260. paper; code Shepherd BE, Blevins M, Vaz LME ...
SherryStokes
Sherry Stokes, Sherry Stokes no longer works in the Department of Biostatistics.
ShinyPresentationNotes
Shiny Presentation Notes Acknowledgements Much of this presentation comes from Getting started with ShinyApps.io and the Teach yourself Shiny tutorial. Using Shiny ...
ShourtCourseShintani
Materials for Shourt Courses
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SitePreferences %MAKETEXT{ "Foswiki's default preferences are located in _1 , however settings defined here have override priority and should be used for local customisations ...
SiyuanMa20220128
%HEAD{ NAME="Siyuan Ma, PhD" AFFILIATION="University of Pennsylvania" TITLE="Modeling the Joint Distribution of Compositional Microbiome Data" IMAGELINK="https ...
SmallTalkSkills
We thank Angel for preparing this topic Summary of Angel's Presentation * SmallTalkTips.pdf Recommended Reading (the Books Angel Covered in her Presentation ...
SmithTable2
Associations between oral health and general health: a survey wide association study of the NHANES * Table 2 (PDF)
SoftballPictures2009
Loading image. Please wait Intramural Softball May 21, 2009 Team Photo (L R) Nate, Will, Cole (L R) Cathy, Umpire, Jeremy, Patrick (L R) Will, Kylie, Jeremy, Nate ...
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Softball team shirt orders are due no later than August 26 at 4 pm. Please contact Seth with general questions regarding shirt orders, and contact Cole or Will with ...
SpecificCovariateORsFromDifferentLRMs
Plot the odds ratios (ORs) for a specific covariate from different logistic regression models Perhaps you are interested in the effect of a specific covariate from ...
StaffMeetings
Quarterly Staff Meetings All meetings located in 3131 MRBIII unless otherwise noted. 2007 January 30 (10:00am) * Good News * Meeting Date and Time * Personnel ...
StatBiomedRes
IGP 304: Statistics for Biomedical Research (Spring 2010) Instructors * Frank Harrell PhD, Professor of Biostatistics, Chairman, Dept. of Biostatistics ...
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Final Exam OLD VERSION DO NOT USE * There were some problems reading this page for some people, possibly due to twiki access control problems * The current, ...
StatBiomedResFinalNew
Final Exam Instructions * This exam is to be taken under conditions given by the Vanderbilt honor code. Do not ask for help for questions from anyone except the ...
StatBiomedResHW3
Problem 1 Re express the following expressions. In one case the expression may become significantly more complex. 1 %$\log(ab(c d))$% 1 %$\frac{e^{ (x y)}} ...
StatBiomedResHW4
Problem 1 170 plants (tulipa armena) were randomly sampled to examine the association between stem length and flower color. The following data were collected: ...
StatBiomedResHWe
Homework 5 Problem 1 200 plants (tulipa armena) were randomly sampled to examine the association between stem length and flower color. The following data were collected ...
StatBiomedResMT
Mid term Exam Due 13Mar08 9am in S 2323 Medical Center North or e mailed to the grading assistant This exam is to be taken under conditions given by the Vanderbilt ...
StatBiomedResMTDistn
IGP 304: Statistics for Biomedical Research (Spring 2008) Midterm Exam Results * Note (04/02/08): Since this course is being taught by two instructors, the ...
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R Code and Examples from Class Introduction R is an powerful statistics package that is also capable of creating publication quality graphics. The experienced user ...
StatBiomedResSyllabus
IGP 304: Statistics for Biomedical Research Instructor: Frank Harrell Course page: http://biostat.mc.vanderbilt.edu/StatBiomedRes Course Goals 1 understand ...
StatCompCourse
Statistical Computing Course Statistical Computing Page * Computer programming prerequisites * Syllabus, course notes, and book by Alzola and Harrell. ...
StatCompServerInfoTopImage
Screenshot of top with the P column representing the last used CPU
StatGraphCourse
Statistical Graphics Course Short Course * Graphics for Clinical Trials * Statistical Graphics for Exploring Data, Presenting Information, and Understanding ...
StatReport
Statistical Reporting, Linking S Output with Report Documents, Literate Programming, Managing Analyses, and Documenting Programs and Data Reproducible Research ...
StatisticalComputingSeries
The Statistical Computing Series The Statistical Computing Series is a monthly event for learning various aspects of modern statistical computing from practitioners ...
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Xi (Steven) Chen Associate Professor of Biostatistics Division of Cancer BiostatisticsDepartment of BiostatisticsVanderbilt University School of Medicine549 Preston ...
StratPlanGrants
Vanderbilt Grants Advantage (VGA) A Proposal for Maximizing Grant Funding in the School of Medicine Future Ideas Two of the most important goals of the Department ...
StripchartOverlaidWithBoxplot
An alternative to 'dynamite plots' (i.e., a bar depicting the mean, with a line depicting the standard deviation or error) We've all seen various examples of 'dynamite ...
StudentMigration
Medical and nursing students' intentions to work abroad or in rural areas: a cross sectional survey in Asia and Africa Silvestri DM, Blevins MB, Afzal AR, Andrews ...
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Subversion Post commit Script This is a fake user used by the commit twiki subversion script to update TWiki pages with log entries. TWiki pages that use this script ...
SupervisorCQI
Main.AyumiShintani 08 Apr 2010 Supervisory and Mentoring skill improvement committee meeting minutes List of Supervisory Efforts as of April 2010 By mentors By ...
SupervisorsRetreat
SUPERVISORS RETREAT Wednesday April 14, 2010; 8:00 11:00AM; 3131 MRB III TIME TOPIC PRESENTER 8:00AM8:15AM Welcome and Overview Linda Stewart ...
SupplementSamples
Common Application Supplement Hannah Plummer mp3 format ogg format GlazunovElegyFinal.mp3 GlazunovElegyFinal.ogg BachSuite3Allemande.mp3 ...
SupportDesc
SUPPORT Datasets Datasets Archived at ICPSR The support dataset is a random sample of 1000 patients from Phases I II of SUPPORT (Study to Understand Prognoses ...
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Svetlana K. Eden, MS Biostatistician III /Svetlana.JPG E mail: svetlana.eden@vanderbilt.edu Phone: 615.343.7014 Fax: 615.343.4924 Vanderbilt University School ...
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Vegan Squash Soup Recipe Paintings * nashvilleFall_sc16.jpg: * vanderbiltSpring_sc16.jpg: * califFlowers_sc32.jpg: * rose_acr_sc32.jpg: * EdenWoods ...
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Examples of using chron() and as.Data() Introduction to String Matching and Manipulation in R using Regular Expressions (regExprTalk.pdf) About efficiency of R loops ...
SweaveConvert
Converting Documents Produced by Sweave and knitr Converting from LaTeX to html The recommended format for statistical reports to send to collaborators is pdf produced ...
SweaveLatex
Sweave knitr and LaTeX Introduction and Helpful Templates: The following will help you start to learn and use knitr Sweave and LaTeX: * rlatex GitHub project: ...
SweaveTemplate
Sweave and knitr Templates NOTE: SUPERCEDED by knitr and LaTeX Styles knitrl and spaper; See GitHub rlatex Project Using LaTeX Style Sweavel /template3.pdf ...
TDT2locus
TDT2locus: An R program for two locus TDT analysis URL of this page: http://biostat.mc.vanderbilt.edu/TDT2locus This program has two functions. The function readin ...
THelmerMBasfordApr09
Department of Biostatistics Seminar/Workshop Series Shedding Light on StarBRITE Resources including the Synthetic Derivative Introduction:Paul A. Harris, PhD, Resarch ...
TWikiBrowserPlugins
Browser Plugins for our TWiki Jump To Topic This is a search plugin that lets you jump to a TWiki topic from the Firefox/IE7 search bar. If you're using Firefox ...
TakashiFunatogawa
Takashi Funatogawa, PhD Title Visiting Scholar Email: takashi.funatogawa #64;vanderbilt.edu Phone: 615.936.6235Fax: 615.936.2602 Cancer Biostatistics CenterVanderbilt ...
TatsukiKoyama
Tatsuki Koyama, PhD Associate Professor of BiostatisticsCenter for Quantitative Sciences and Department of BiostatisticsVanderbilt University Medical CenterVanderbilt ...
TatsukiRcode
R code for tplot, kmplot and other functions. * RFunctions1.R: RFunctions1.R R code for other miscellaneous functions. * RFunctions2.R: RFunctions2.R R code ...
TebebGebretsadik
Tebeb Gebretsadik, MPH Associate in Biostatistics E mail: tebeb.gebretsadik@vanderbilt.edu Phone: 615.322.8630 Fax: 615.343.4924Vanderbilt University School ...
TheodoreSperoff
Theodore Speroff, Ph.D. Research Associate Professor of Biostatistics E mail: ted.speroff@vanderbilt.edu Website: Vanderbilt School of MedicineVA Tennessee Valley ...
TheresaScott
Theresa Scott's Teaching Material IMPORTANT: Theresa (Terri) Scott is no longer a Biostatistician with Department of Biostatistics at Vanderbilt University, but ...
ThirdContrast
Incorporate the third contrast of a three level categorical predictor into the odds ratio summary plot of a logistic regression model In any regression model, by default ...
ThomasStewart
function hidedisplay(elementClass){ var x = document.getElementsByClassName(elementClass); for (i = 0; i /* Change font on whole page*/ html body { font family:Roboto ...
ThunderbirdExchange
Notes on using Thunderbird email client with the Vanderbilt Medical Center's Exchange Server email server * The only client program that works directly with the ...
TokaiBiostatII
Master in Clinical Biomedical Science Biostatistics II Year 2007 * Instructor: Ayumi Shintani, Ph.D, MPH, Office S 2323 MCN, Phone: (615) 936 1954, E mail: Ayumi ...
TravelPolicy
Travel Authorization * Prior to planning or booking any travel, please obtain approval through dbconnect travel authorization form. PLEASE NOTE: Foreign Travel ...
TutorialESS
ESS tutorial UseR! 2012 Richard M Heiberger Martin Mächler June 12, 2012 List of useful Web resources ("Links") * Emacs Wiki * ESS Homepage (the ESS manual ...
TwikiWorkShop
Outline for Linux Workshop January 26, 2005 January 25, 2006 January 30, 2008 Note that the 2007 version of this workshop can be found at MoreTwikiWorkShop. ...
TwoStageExample
*p0* p1 alpha beta Type n1 r1 nt rt Actual type I Actual power Correct p value Naive p value .1 .3 .05 .20 Minimax 15 1 25 ...
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Proper inference from Simon's two stage designs by Tatsuki Koyama There are many software available for constructing a Simon's design. These software usually ...
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Making Inference from a Simon's Two stage Design in Phase II Clinical Trials by Tatsuki Koyama Introduction Background Technical Details Pvalue Confidence Interval ...
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Making Inference from a Simon's Two stage Design in Phase II Clinical Trials by Tatsuki Koyama * New page TwoStageInference
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Ubuntu laptop wireless configuration Please see About the VU Wireless Network and Wireless Access for Students, Faculty and Staff for instructions. As of October ...
UbuntuSetup
Setup for Ubuntu 11.10 (and up) NOTE This procedure has been superseded by Main.UbuntuSetup20. Click here for Windows system setup Re installation Note If you ...
UbuntuWifi
How to set up wifi for Ubuntu 13.10 so that it works with our wireless networking environment See Wireless Access for Students, Faculty and Staff for the official ...
UgradBiostatPlan
Brainstorming Design of the First Biostatistics/General Applied Statistics Undergraduate Course at Vanderbilt Winning Choice at 2015 12 02 Faculty Meeting: Introduction ...
UseR-2012
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UsingSage
Using Sage for math This page is about the open source math software (http://www.sagemath.org), NOT Sage Publications or the SAGE Visualization group. Download/installation ...
VSPReport
Vanderbilt Specialty Pharmacy (VSP) Collaboration Projects Reports * Epidiolex Project Report: epidiolex QR_2022.08.23_final.html * Adherence Clinic Project ...
VaPOEM
* Main.KristenKotter 20 Jul 2009 * log of some relevant Kristen Kotter POEM and other related VA Work with completion dates Actionable Items and date assigned ...
VaProjects
VA and nonVA Health Services Research Note this page and related pages are in need of an overhaul. The wiki group is at VaHsrGroup. To be added, please contact Robert ...
VaTrainingCertificates
IRBNet * https://www.irbnet.org * The VA IRB website is the primary certificates repository. Storing copies there is required. Storing copies here is not necessary ...
VaWocPaperwork
VA WOC Paperwork For those joining the VA for the first time, the following attachments are the initial paperwork for getting WOC status at the VA. The WOC (without ...
VenablesShortCourse
NOTE Windows users getting "does not appear to be a valid archive" message can download the winrar archiver from http://www.rarlab.com to uncompress the .zip file ...
VideoLearning
Video Learning The Department of Biostatistics is happy to provide you a platform for learning biostatistics via online video lectures. These videos were created on ...
VikingNotes
Viking's Notes Screen To change the escape sequence from C a to `, add this to your .screenrc: escape `` Kubuntu on MacBook Helpful Tutorial https://help.ubuntu ...
VikingRuby
Viking's Ruby Snippets Here's some Ruby snippets I've written or found. Some of these are here to help me remember how to do certain things, and others are here for ...
VincentAgboto
Vincent Agboto, Ph.D. Assistant Professor of Biostatistics E mail: vagboto@mmc.edu Website: Meharry Medical CollegeMeharry Medical CollegeFamily and Community ...
WarrenDunn
Warren R. Dunn, MD, MPH Assitant Professor of Orthopaedics Rehabilitation Assitant Professor of General Internal Medicine Public Heal Phone: 615.322.7878 Fax ...
WarrenLambert
Warren Lambert, Ph.D. Senior Associate in Biostatistics E mail: warren.lambert@vanderbilt.edu Website: Kennedy CenterVanderbilt UniversityPsychologyKennedy CenterNashville ...
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Anesthesiology Collaboration Project Watkins, Scott Background Information * PI: Watkins, Scott * Date: 02/08/2013 * Title: Emergency Checklist Cards for ...
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Materials for William Dupont Important Components of ASA Nomination Guidelines for Letters of Support Full ASA Guidelines * Letters of support are generally ...
WebHome
Department of Biostatistics Vanderbilt University School of Medicine The Department * Goals and Vision * Frequently Asked Questions (FAQ) * Our People ...
WebVisualizationUserManual
Web Visualization User Manual The following sections hope to provide enough information to setup a user new to our web visualization tools for accessing his data ...
WednesdayClinicNotes
Surgery, anesthesiology, and emergency and critical care medicine The Biostatistics Clinic on Wednesdays is dedicated to biostatistics applications in surgery, anesthesiology ...
WeiWang
Wei Wang, MS, PhD Biostatistician II E mail: wei.wang.3 #64;vanderbilt.edu Phone: 615.322.7304 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
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WFCCM 2 How To Step by step Step 1: Loading the Data and Information Sets * Go to "File Add a Data Set" to add the given data * The name of the Data ...
Wfccm2PublicDownload
* Version 1.0.00 dd mmm yyyy: Public release. Score generation and distance complete. For instructions, please refer to the guide. If you can not run the project, ...
WfccmAlgorithmHu
Hu Algorithm function 1 : log likelihood to estimate logmu * f(logmu) = %$\sum(\frac{1}{2}*logsigma2 \frac{(X exp(logmu))^2}{2*exp(logsigma2)})$% * logsigma2 ...
WfccmAlgorithmKS
Kolmogorov Smirnov Algorithm Computes the difference of the distributions of two empirical observation sets. K S Statistic 1 %$N_1$% is the size of group 1 ...
WfccmAlgorithmSAM
SAM Algorithm The data is %$x_{ij}$%, i = 1, 2, ... p genes, j = 1, 2, ... n samples, and response data %$y_j$%, j = 1,2, ... n (%$y_j$% may be a vector). Generic ...
WfccmAlgorithmTTest
TTest Algorithm Performed on a set of non negative numbers and labels of size N. There must be two specific labels. Label 1 must be 1 and label 2 must be 2. There ...
WfccmAlgorithmWGA
WGA Algorithm WGA = \begin{displaymath} \frac{d_b}{k_1d_{1} k_2d_{2} \alpha} \end{displaymath} * description of letters * %$n_i$% is the total number of ...
WfccmAlgorithmWilcoxon
Wilcoxon Algorithm Performed on a set of numbers and labels of size N. There must be two specific labels. Label 1 must be 1 and label 2 must be 2. There can also be ...
WfccmDataQualityControl
Data Quality Control Design Goals * Ability to generate ICC Kappa value, Agreement rate, and Correlation values based on a data set. * Ability to generate ...
WfccmDataSubmissionGuidelines
The following are the guidelines for submitting data for analysis. These guidelines are established to make the process better for both sides. Following the guidelines ...
WfccmDataToolsVisualization
Data Tool and Visualization Detailed Time Line and Tasks Specification Apr 18 Apr 22 1 week 1. Determine interface requriments. 1. Determine output requriments ...
WfccmDownload
* Version 1.14 2004 07 13 Built to use a static library. * Version 1.13 2004 04 14 User interface changes by Joan Zhang. * Version 1.12 2004 03 12 Fixed ...
WfccmMultidimensionalScaling
Multidimensional Scaling Design: Detailed Time Line and Tasks Specification Apr 18 May 27 6 weeks 1. Determine algorithm(s) to aquire 3D data. 1. Determine ...
WfccmNotes
Meeting Notes Nov 3 * Tasks * First stage, build database and interfaces * Haojie, Huiming, Joe * 15 Dec 2005 April 5 * Slides ...
WfccmQcAgreement
Kappa Value and Agreement Rate algorithms * 1. For each gene/feature, convert their are values to binary * new value(proteinomic data) = 1 if old value is ...
WfccmQcCorrelation
Pearson Correlation Coefficient Suppose that we have 2 samples/columns, X and Y. N features from feature1 to featureN. The test statistics is computed as : denominator1 ...
WfccmScore
Score Parent: DataContainer Public Methods * Score() Default Constructor. * Score(Score) Copy Constructor. * Score(string) Loads the Score from ...
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This is the code used to for the analyses in the manuscript "Estimating the optimal CD4 count for HIV infected persons to start antiretroviral therapy." No data files ...
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this is our live demo, thanks Google's Home Page Jeffrey Blume, PhD Main.ColeBeck 23 Jan 2013 System.SourceHighlightingPlugin set.seed(47) sample(c("Baltimore ...
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Wiki Usage Guidelines and Maintenance View a Wiki presentation by Cole Beck: VIDEO The wiki Philosophy The wiki philosophy is based on * Facilitating collaborations ...
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Foswiki or TWiki? Foswiki is a fork of the TWiki software. If you want to know why the fork was created, read this. It was in our best interest to switch because ...
WillGray
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WillSohn * Kidney RCC Sohn Cohort_Construction 20140801.docx: RCC Followup Study Cohort Construction 8/5/14
WilliamCunningham
* Name: William Cunningham * Email: wj.cunningham #64;vanderbilt.edu * Phone Number: 322 5462 My Art Website Department Responsibilities
WilliamDupont
William D. Dupont, Ph.D., F.A.S.A. Professor of Biostatistics, Preventive Medicine and Health Policy Email: william.dupont #64;vumc.org Phone: (615) 343 4100 Fax ...
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Department of Biostatistics Seminar/Workshop Series Introduction to Marginal Structural Models William D. Dupont, PhD Professor, Departments of Biostatistics and ...
WilliamWu
Huiyun (William) Wu, Ph.D. Research Assistant Professor of Biostatistics E mail: huiyun.wu #64;vanderbilt.edu Phone: 615.936.2788 Fax: 615.936.2602 Vanderbilt ...
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* Name: Marc Wozniak * Email: marc.wozniak #64;vanderbilt.edu * Phone Number: 33605 * Comment: Cell Developmental Biology BW Personal Preferences (details ...
WodanLing20220126
%HEAD{ NAME="Wodan Ling, PhD" AFFILIATION="Fred Hutchinson Cancer Research Center" TITLE="Statistical Analysis of Large Scale Microbiome Profiling Studies: Batch ...
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Working Remotely Here is a list of links as referenced by the How to work remotely seminar. Communication * Vanderbilt web mail * Third party e mail client ...
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Writing Extensions in R A small tutorial for writing extensions in R. Integrating R with External Languages You can write extensions for R in FORTRAN or C to help ...
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Wu Gong Senior Biostatistician Wu.Gong@vumc.org Vanderbilt University School of Medicine Department of Biostatistics 2525 West End Ste. 11113F Nashville, TN 37203 ...
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vuNet Configuration Screenshots from xubuntu 15.04 (6/1/2015) * 00network.png: * 01network.png: * 02network.png: * 03network.png ...
XueHan
Xue Han, M.P.H. M.S. Biostatistician III E mail: xue.han@vanderbilt.eduPhone: (615) 322 2270Fax: (615) 343 4924 Vanderbilt University School of MedicineDepartment ...
XuleiLiu
Xulei (Shirley) Liu Biostatistician IV E mail: xulei.liu@vanderbilt.edu Phone: 615.322.9362Fax: 615.343.4924 Vanderbilt University School of Medicine Department ...
YannaSong
Yanna Song, MS Biostatistician III E mail: yanna.song@vanderbilt.edu Phone: 615.343.0209 Vanderbilt University School of MedicineDepartment of BiostatisticsD ...
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Yanna Song's Farewell Lunch January 20, 2015 * *
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My R Functions * RandomAssignment.r: Generate randomization schedules based on permuted blocks of varying sizes * magchisq.r: Chisq test for a two by two table ...
YaominXu
Yaomin Xu, PhD Assistant Professor of Biostatistics Assistant Professor of Biomedical Informatics E mail: yaomin.xu #64;vanderbilt.edu Phone: 615 936 8199 Vanderbilt ...
YiHe
Yi He, MSBiostatistician II E mail: yi.he@vanderbilt.edu Phone: 615.343.3878 Fax: 615.343.4924 Vanderbilt University School of MedicineDepartment ...
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%HEAD{ NAME="Yichen Jia, PhD" AFFILIATION="University of Pittsburgh" TITLE="New Model based and Deep Learning Methods for Survival Data" IMAGELINK="https:/ ...
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Yolanda Ayuso, B.S. HR Administrator Email: yolanda.ayuso #64;vanderbilt.edu Phone: 615.936.4855 Fax: 615.936.2602 Vanderbilt University School of MedicineDivision ...
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Materials for Yu Shyr Important Components of ASA Nomination Guidelines for Letters of Support ASA Fellows Home Page * Letters of support are generally the ...
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Yu Shyr, PhD, Dr(hc), FASA, FAAAS, FAACR Harold L. Moses Chair in Cancer Research Chair, Department of Biostatistics Director, Center for Quantitative Sciences ...
YuweiZhu
Yuwei Zhu, M.D., M.S. Senior Associate in Biostatistics E mail: yuwei.zhu@vumc.org Phone: 615.343.4750 Fax: 615.343.4924 Vanderbilt University School of Medicine ...
YvonnePoindexter
Yvonne Poindexter Editorial Assistant II571 Preston Bldg.Nashville, TN 37232 6848Email: yvonne.poindexter #64;vanderbilt.edu Phone: 615.936.8932
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Note : ZhengZheng (Jane) Tang is no longer with the department. This topic is left here to avoid bad links elsewhere. ZhengZheng (Jane) Tang, PhD Assistant ...
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* Name: zhouwen Liu * Email: zhouwen.liu #64;vanderbilt.edu * Phone Number: 27952 * Comment: Personal Preferences (details in .TWikiVariables) * Parallel ...
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Zoom Backgrounds These backgrounds are approved. * Biostat_background _blue.png: * Biostat_Background _brown.png: * Biostat_Background _gray ...
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